RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 ANKRD20A5PA0PJZ0 165 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 AP4M1O00189 453 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 PDCD6O75340 191 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 KLKB1P03952 638 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 OR5G3P0C626 314 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 SLC25A4P12235 298 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 NDUFB7P17568 137 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 ERVS71-1P61550 626 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 RPS16P62249 146 aaKnown RBP5.49□□□□□ -1.53
SCN1A-203ENST00000409050 LSM6P62312 80 aaKnown RBP5.49□□□□□ -1.53
SCN1A-203ENST00000409050 MAT1AQ00266 395 aaKnown RBP5.49□□□□□ -1.53
SCN1A-203ENST00000409050 CEBPEQ15744 281 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 HAGHQ16775 308 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 PRTGQ2VWP7 1150 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 RGS7BPQ6MZT1 257 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-203ENST00000409050 C20orf196Q8IYI0 205 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 OR52L2PQ8NGH6 319 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 OR5D18Q8NGL1 313 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 MARCH1Q8TCQ1 289 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 SPPL3Q8TCT6 385 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 RXFP4Q8TDU9 374 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 TMEM230Q96A57 120 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 OR10C1Q96KK4 312 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 C4orf45Q96LM5 186 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 SH2D2AQ9NP31 389 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 NTNG1Q9Y2I2 539 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 ARL2-SNX15V9GYD0 113 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 LINC00862A6NCI5 91 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 FGF17O60258 216 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 CRISP2P16562 243 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 HLA-GP17693 338 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 GPM6AP51674 278 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 HLA-DRB3P79483 266 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 C19orf57Q0VDD7 668 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 SMAD4Q13485 552 aaKnown RBP5.49□□□□□ -1.53
SCN1A-203ENST00000409050 HES1Q14469 280 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 FAM209AQ5JX71 171 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 SCCPDHQ8NBX0 429 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 OR1N1Q8NGS0 311 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 MENTQ9BUN1 341 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 NXF2Q9GZY0 626 aaKnown RBP5.49□□□□□ -1.53
SCN1A-203ENST00000409050 HCFC1R1Q9NWW0 138 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 TAAR3PQ9P1P4 343 aa5.49□□□□□ -1.53
SCN1A-203ENST00000409050 NDUFB3O43676 98 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 GATCO43716 136 aaKnown RBP5.48□□□□□ -1.53
SCN1A-203ENST00000409050 TMPRSS11DO60235 418 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 CXCL10P02778 98 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 MT-ND6P03923 174 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 PGA4P0DJD7 388 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 PGA5P0DJD9 388 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 ANKRD55Q3KP44 614 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 OR2M7Q8NG81 312 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 C16orf52Q8NHV5 167 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 EXTL1Q92935 676 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 ADGRG7Q96K78 797 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 BANF2Q9H503 90 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 BARX1Q9HBU1 254 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-203ENST00000409050 A4GNTQ9UNA3 340 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 AMDHD2Q9Y303 409 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 SIGLEC1Q9BZZ2 1709 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 OR2M5A3KFT3 312 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 HAND1O96004 215 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 PMCHP20382 165 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 MPV17LQ2QL34 196 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 PRSS45Q7RTY3 260 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 OR13H1Q8NG92 308 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 PHF7Q9BWX1 381 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-203ENST00000409050 TMEM231Q9H6L2 316 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 PARD6AQ9NPB6 346 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 TECRQ9NZ01 308 aaKnown RBP5.48□□□□□ -1.53
SCN1A-203ENST00000409050 DUSP13Q9UII6 198 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 SIGLEC7Q9Y286 467 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 TRAV17A0A0B4J275 112 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 A0A1W2PPC4 97 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 HRO43593 1189 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 WDR1O75083 606 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 GALR1P47211 349 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 PRRX1P54821 245 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 ERVFC1-1P60608 527 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 SLC38A11Q08AI6 406 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 RIGQ13278 110 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 LINC00303Q3SY05 128 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 PAQR6Q6TCH4 344 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 ASCL5Q7RTU5 278 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 ERASQ7Z444 233 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 ZFP62Q8NB50 900 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-203ENST00000409050 ZBTB44Q8NCP5 570 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 CCDC74AQ96AQ1 378 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 WDR89Q96FK6 387 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-203ENST00000409050 FOXB1Q99853 325 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 MMP25Q9NPA2 562 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 OR51B4Q9Y5P0 310 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 A0A1W2PPQ1 181 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 ALG1L2C9J202 215 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 OGG1O15527 345 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 MBTPS2O43462 519 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 LANCL1O43813 399 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 IGHA2P01877 340 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 GRPP07492 148 aa5.48□□□□□ -1.53
SCN1A-203ENST00000409050 CST2P09228 141 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms