RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 TBPP20226 339 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 ARF1P84077 181 aaKnown RBP13.04□□□□□ -0.32
CBX3-202ENST00000396386 RIPPLY1Q0D2K3 151 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 SLC10A1Q14973 349 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 RNPS1Q15287 305 aaKnown RBP13.04□□□□□ -0.32
CBX3-202ENST00000396386 CRIP3Q6Q6R5 217 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 NLRC3Q7RTR2 1065 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 MCEMP1Q8IX19 187 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 OR52B4Q8NGK2 314 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 HAS2Q92819 552 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 PIGTQ969N2 578 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 SPSB1Q96BD6 273 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 CPNE2Q96FN4 548 aaPredicted RBP13.04□□□□□ -0.32
CBX3-202ENST00000396386 SLC2A8Q9NY64 477 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 LIPGQ9Y5X9 500 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 ZNF292O60281 2723 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 PTPRZ1P23471 2315 aaPredicted RBP13.04□□□□□ -0.32
CBX3-202ENST00000396386 A0A1W2PP11 408 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 TMEM82A0PJX8 343 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 SSX5O60225 188 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 GIPP09681 153 aaPredicted RBP13.04□□□□□ -0.32
CBX3-202ENST00000396386 NAT2P11245 290 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 DNASE1P24855 282 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 ACKR3P25106 362 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 MPZP25189 248 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 SNRPD2P62316 118 aaKnown RBP13.04□□□□□ -0.32
CBX3-202ENST00000396386 RPS27AP62979 156 aaKnown RBP13.04□□□□□ -0.32
CBX3-202ENST00000396386 CNN3Q15417 329 aaKnown RBP13.04□□□□□ -0.32
CBX3-202ENST00000396386 C3AR1Q16581 482 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 PNLIPRP3Q17RR3 467 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 RSPO4Q2I0M5 234 aaPredicted RBP13.04□□□□□ -0.32
CBX3-202ENST00000396386 PLXDC2Q6UX71 529 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 OR4S1Q8NGB4 309 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 APH1AQ96BI3 265 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 S100A13Q99584 98 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 PRRT1Q99946 306 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 POFUT1Q9H488 388 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 GPR173Q9NS66 373 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 PLEKHA6Q9Y2H5 1048 aa13.04□□□□□ -0.32
CBX3-202ENST00000396386 CNTRLQ7Z7A1 2325 aa13.03□□□□□ -0.32
CBX3-202ENST00000396386 ARHGAP21Q5T5U3 1957 aa13.03□□□□□ -0.32
CBX3-202ENST00000396386 SOCS1O15524 211 aa13.03□□□□□ -0.32
CBX3-202ENST00000396386 AKR7A2O43488 359 aa13.03□□□□□ -0.32
CBX3-202ENST00000396386 ZNF780AO75290 641 aaPredicted RBP13.03□□□□□ -0.32
CBX3-202ENST00000396386 DMRTC1Q5HYR2 192 aa13.03□□□□□ -0.32
CBX3-202ENST00000396386 PABPC1L2AQ5JQF8 200 aa13.03□□□□□ -0.32
CBX3-202ENST00000396386 RTN4RL2Q86UN3 420 aa13.03□□□□□ -0.32
CBX3-202ENST00000396386 STEAP2Q8NFT2 490 aa13.03□□□□□ -0.32
CBX3-202ENST00000396386 OR2T35Q8NGX2 323 aa13.03□□□□□ -0.32
CBX3-202ENST00000396386 GRPEL2Q8TAA5 225 aa13.03□□□□□ -0.32
CBX3-202ENST00000396386 SLC6A7Q99884 636 aa13.03□□□□□ -0.32
CBX3-202ENST00000396386 ALX4Q9H161 411 aaPredicted RBP13.03□□□□□ -0.32
CBX3-202ENST00000396386 LDAHQ9H6V9 325 aa13.03□□□□□ -0.32
CBX3-202ENST00000396386 CA10Q9NS85 328 aa13.03□□□□□ -0.32
CBX3-202ENST00000396386 PTPRBP23467 1997 aa13.02□□□□□ -0.32
CBX3-202ENST00000396386 MFNGO00587 321 aa13.02□□□□□ -0.32
CBX3-202ENST00000396386 XRCC2O43543 280 aa13.02□□□□□ -0.32
CBX3-202ENST00000396386 CSN2P05814 226 aa13.02□□□□□ -0.32
CBX3-202ENST00000396386 MGMTP16455 207 aa13.02□□□□□ -0.32
CBX3-202ENST00000396386 PRKACBP22694 351 aa13.02□□□□□ -0.32
CBX3-202ENST00000396386 SCGB2B2Q4G0G5 96 aa13.02□□□□□ -0.32
CBX3-202ENST00000396386 C4orf46Q504U0 113 aa13.02□□□□□ -0.32
CBX3-202ENST00000396386 PLAC9Q5JTB6 97 aa13.02□□□□□ -0.32
CBX3-202ENST00000396386 ZNF100Q8IYN0 542 aa13.02□□□□□ -0.32
CBX3-202ENST00000396386 GVQW1Q8N7I0 195 aa13.02□□□□□ -0.32
CBX3-202ENST00000396386 OR11H4Q8NGC9 324 aa13.02□□□□□ -0.32
CBX3-202ENST00000396386 OR51T1Q8NGJ9 327 aa13.02□□□□□ -0.32
CBX3-202ENST00000396386 CHIAQ9BZP6 476 aa13.02□□□□□ -0.32
CBX3-202ENST00000396386 ZNF552Q9H707 407 aaPredicted RBP13.02□□□□□ -0.32
CBX3-202ENST00000396386 MYOZ1Q9NP98 299 aaPredicted RBP13.02□□□□□ -0.32
CBX3-202ENST00000396386 FAM86C1Q9NVL1 165 aa13.02□□□□□ -0.32
CBX3-202ENST00000396386 ANAPC10Q9UM13 185 aa13.02□□□□□ -0.32
CBX3-202ENST00000396386 TRGV5A0A0B4J1U4 118 aa13.02□□□□□ -0.33
CBX3-202ENST00000396386 hCG_38984A0A1B0GV85 526 aa13.02□□□□□ -0.33
CBX3-202ENST00000396386 SERPINA2P20848 420 aa13.02□□□□□ -0.33
CBX3-202ENST00000396386 RAP2BP61225 183 aa13.02□□□□□ -0.33
CBX3-202ENST00000396386 NKPD1Q17RQ9 610 aa13.02□□□□□ -0.33
CBX3-202ENST00000396386 CLVS2Q5SYC1 327 aa13.02□□□□□ -0.33
CBX3-202ENST00000396386 OR52W1Q6IF63 320 aa13.02□□□□□ -0.33
CBX3-202ENST00000396386 C1QL2Q7Z5L3 287 aa13.02□□□□□ -0.33
CBX3-202ENST00000396386 FAM89BQ8N5H3 189 aa13.02□□□□□ -0.33
CBX3-202ENST00000396386 PRDM14Q9GZV8 571 aa13.02□□□□□ -0.33
CBX3-202ENST00000396386 DEFB127Q9H1M4 99 aa13.02□□□□□ -0.33
CBX3-202ENST00000396386 KCNK7Q9Y2U2 307 aa13.02□□□□□ -0.33
CBX3-202ENST00000396386 CPT2P23786 658 aa13.01□□□□□ -0.33
CBX3-202ENST00000396386 HRH1P35367 487 aa13.01□□□□□ -0.33
CBX3-202ENST00000396386 CBX5P45973 191 aa13.01□□□□□ -0.33
CBX3-202ENST00000396386 ACTBL2Q562R1 376 aa13.01□□□□□ -0.33
CBX3-202ENST00000396386 ATPAF1Q5TC12 328 aaPredicted RBP13.01□□□□□ -0.33
CBX3-202ENST00000396386 C9orf135Q5VTT2 229 aa13.01□□□□□ -0.33
CBX3-202ENST00000396386 IGF2-ASQ6U949 168 aa13.01□□□□□ -0.33
CBX3-202ENST00000396386 TMED4Q7Z7H5 227 aa13.01□□□□□ -0.33
CBX3-202ENST00000396386 SLC7A5P1Q8MH63 180 aa13.01□□□□□ -0.33
CBX3-202ENST00000396386 MUC20Q8N307 709 aaPredicted RBP13.01□□□□□ -0.33
CBX3-202ENST00000396386 OR13C8Q8NGS7 320 aa13.01□□□□□ -0.33
CBX3-202ENST00000396386 ARHGAP5-AS1Q96IT6 56 aa13.01□□□□□ -0.33
CBX3-202ENST00000396386 GPR137Q96N19 417 aa13.01□□□□□ -0.33
CBX3-202ENST00000396386 TM2D1Q9BX74 207 aa13.01□□□□□ -0.33
CBX3-202ENST00000396386 ELL3Q9HB65 397 aaPredicted RBP13.01□□□□□ -0.33
CBX3-202ENST00000396386 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms