RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 ZNF724A8MTY0 619 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 KDM4EB2RXH2 506 aaPredicted RBP5.09□□□□□ -1.59
RFFL-202ENST00000394597 SURF4O15260 269 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 TNFSF12O43508 249 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 CCL4P13236 92 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 SELLP14151 372 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 TMEM11P17152 192 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 H2BFSP57053 126 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 RPL23AP62750 156 aaKnown RBP5.09□□□□□ -1.59
RFFL-202ENST00000394597 CDK5Q00535 292 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 UBE2V2Q15819 145 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 DMRTA1Q5VZB9 504 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 NIPAL3Q6P499 406 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 SLC23A3Q6PIS1 610 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 CD300LDQ6UXZ3 194 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 SPNS3Q6ZMD2 512 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 LINC00696Q6ZRV3 163 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 TMPRSS11FQ6ZWK6 438 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 H1FNTQ75WM6 255 aaPredicted RBP5.09□□□□□ -1.59
RFFL-202ENST00000394597 TRAPPC6BQ86SZ2 158 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 SLC35G3Q8N808 338 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 NEK7Q8TDX7 302 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 PTPMT1Q8WUK0 201 aaPredicted RBP5.09□□□□□ -1.59
RFFL-202ENST00000394597 SLC25A43Q8WUT9 341 aaPredicted RBP5.09□□□□□ -1.59
RFFL-202ENST00000394597 SMIM19Q96E16 107 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 SGCZQ96LD1 299 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 Q96M85 177 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 HIST1H2AAQ96QV6 131 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 PRRX2Q99811 253 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 SLCO5A1Q9H2Y9 848 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 FKRPQ9H9S5 495 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 CMC2Q9NRP2 79 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 ZNF701Q9NV72 531 aaPredicted RBP5.09□□□□□ -1.59
RFFL-202ENST00000394597 DNAJB12Q9NXW2 375 aaKnown RBP5.09□□□□□ -1.59
RFFL-202ENST00000394597 STEAP1Q9UHE8 339 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 HRKO00198 91 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 CTDSPLO15194 276 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 SIAH2O43255 324 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 OR2A4O95047 310 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 DDAH2O95865 285 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 IGHG1P01857 330 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 HEXAP06865 529 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 IFI6P09912 130 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 SNCAP37840 140 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 SLC37A1P57057 533 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 ACSM1Q08AH1 577 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 CDK5R1Q15078 307 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 TRIP6Q15654 476 aaKnown RBP5.09□□□□□ -1.59
RFFL-202ENST00000394597 SLC35D3Q5M8T2 416 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 LYG2Q86SG7 212 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 SGPP2Q8IWX5 399 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 ZNF100Q8IYN0 542 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 OR4D11Q8NGI4 311 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 SCGB1C1Q8TD33 95 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 RGP1Q92546 391 aaPredicted RBP5.09□□□□□ -1.59
RFFL-202ENST00000394597 FAM3DQ96BQ1 224 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 OR2A7Q96R45 310 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 SLC35B3Q9H1N7 401 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 NPDC1Q9NQX5 325 aaPredicted RBP5.09□□□□□ -1.59
RFFL-202ENST00000394597 ANKRD10Q9NXR5 420 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 AMDHD2Q9Y303 409 aa5.09□□□□□ -1.59
RFFL-202ENST00000394597 KLF2Q9Y5W3 355 aaPredicted RBP5.09□□□□□ -1.59
RFFL-202ENST00000394597 E9PQ18 207 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 FFAR1O14842 300 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 PLPP2O43688 288 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 GCM2O75603 506 aaPredicted RBP5.08□□□□□ -1.6
RFFL-202ENST00000394597 TBX6O95947 436 aaPredicted RBP5.08□□□□□ -1.6
RFFL-202ENST00000394597 IFNA5P01569 189 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 MAKP20794 623 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 MSR1P21757 451 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 FCGR2CP31995 323 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 CSNK1A1P48729 337 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 SUMO3P55854 103 aaPredicted RBP5.08□□□□□ -1.6
RFFL-202ENST00000394597 RAB11AP62491 216 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 PLP2Q04941 152 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 MAJINQ3KP22 176 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 DND1Q8IYX4 353 aaKnown RBP5.08□□□□□ -1.6
RFFL-202ENST00000394597 C17orf47Q8NEP4 570 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 ASB17Q8WXJ9 295 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 SPACA9Q96E40 222 aaPredicted RBP5.08□□□□□ -1.6
RFFL-202ENST00000394597 FAM210BQ96KR6 192 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 GPR87Q9BY21 358 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 GPR173Q9NS66 373 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 MTFP1Q9UDX5 166 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 MCTS1Q9ULC4 181 aaKnown RBP5.08□□□□□ -1.6
RFFL-202ENST00000394597 TNFSF18Q9UNG2 199 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 PMS2P1A4D2B8 440 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 MEGF11A6BM72 1044 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 SHISA7A6NL88 538 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 ALG1L2C9J202 215 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 GLCEO94923 617 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 CTSBP07858 339 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 VSIG10L2P0DP72 767 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 HIST1H1BP16401 226 aaKnown RBP5.08□□□□□ -1.6
RFFL-202ENST00000394597 MPGP29372 298 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 RPL12P30050 165 aaKnown RBP5.08□□□□□ -1.6
RFFL-202ENST00000394597 SQSTM1Q13501 440 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 ZNF345Q14585 488 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 SSPNQ14714 243 aa5.08□□□□□ -1.6
RFFL-202ENST00000394597 EMC4Q5J8M3 183 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms