RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 MMP7P09237 267 aaPredicted RBP13.13□□□□□ -0.31
GPC3-202ENST00000394299 CCNOP22674 350 aa13.13□□□□□ -0.31
GPC3-202ENST00000394299 SSBP1Q04837 148 aaKnown RBP13.13□□□□□ -0.31
GPC3-202ENST00000394299 RIPPLY2Q5TAB7 128 aa13.13□□□□□ -0.31
GPC3-202ENST00000394299 NUFIP2Q7Z417 695 aaKnown RBP13.13□□□□□ -0.31
GPC3-202ENST00000394299 SEMA6DQ8NFY4 1073 aa13.13□□□□□ -0.31
GPC3-202ENST00000394299 KCNG3Q8TAE7 436 aa13.13□□□□□ -0.31
GPC3-202ENST00000394299 SLC23A1Q9UHI7 598 aa13.13□□□□□ -0.31
GPC3-202ENST00000394299 KLF13Q9Y2Y9 288 aaPredicted RBP13.13□□□□□ -0.31
GPC3-202ENST00000394299 ZNF292O60281 2723 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 IGKV3D-15A0A087WSY6 115 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 FAM230AA0A1W2PPH8 454 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 CDRT15L2A8MXV6 281 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 KLRC4-KLRK1H3BQV0 150 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 SYNGR4O95473 234 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 PMP2P02689 132 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 CD74P04233 296 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 HRH1P35367 487 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 CXADRP78310 365 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 ZNF92Q03936 586 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 SLC10A1Q14973 349 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 C4orf46Q504U0 113 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 OR51T1Q8NGJ9 327 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 MRGPRFQ96AM1 343 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 RAB3CQ96E17 227 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 IP6K3Q96PC2 410 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 SLA2Q9H6Q3 261 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 RANBP3Q9H6Z4 567 aaPredicted RBP13.12□□□□□ -0.31
GPC3-202ENST00000394299 B3GNT2Q9NY97 397 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 ZNF581Q9P0T4 197 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 FBLN5Q9UBX5 448 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 NPTNQ9Y639 398 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 IGKV1-27A0A075B6S5 117 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 OR14I1A6ND48 311 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 LINC01387J3KSC0 135 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 SPRY1O43609 319 aaPredicted RBP13.12□□□□□ -0.31
GPC3-202ENST00000394299 CAPZA1P52907 286 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 LGALSLQ3ZCW2 172 aaPredicted RBP13.12□□□□□ -0.31
GPC3-202ENST00000394299 ZNF766Q5HY98 468 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 OR52H1Q8NGJ2 320 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 MAFIPQ8WZ33 124 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 TMEM45BQ96B21 275 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 MED30Q96HR3 178 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 LDAHQ9H6V9 325 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 GPN1Q9HCN4 374 aaPredicted RBP13.12□□□□□ -0.31
GPC3-202ENST00000394299 ASCL3Q9NQ33 180 aa13.12□□□□□ -0.31
GPC3-202ENST00000394299 EIF3KQ9UBQ5 218 aaKnown RBP13.12□□□□□ -0.31
GPC3-202ENST00000394299 MTRF1O75570 445 aaKnown RBP13.11□□□□□ -0.31
GPC3-202ENST00000394299 APOC1P02654 83 aa13.11□□□□□ -0.31
GPC3-202ENST00000394299 CD46P15529 392 aa13.11□□□□□ -0.31
GPC3-202ENST00000394299 H2BFSP57053 126 aa13.11□□□□□ -0.31
GPC3-202ENST00000394299 ATPAF1Q5TC12 328 aaPredicted RBP13.11□□□□□ -0.31
GPC3-202ENST00000394299 CDH24Q86UP0 819 aa13.11□□□□□ -0.31
GPC3-202ENST00000394299 ZFP62Q8NB50 900 aaPredicted RBP13.11□□□□□ -0.31
GPC3-202ENST00000394299 PP6455Q8WZ26 134 aa13.11□□□□□ -0.31
GPC3-202ENST00000394299 SNAPC3Q92966 411 aa13.11□□□□□ -0.31
GPC3-202ENST00000394299 C12orf49Q9H741 205 aa13.11□□□□□ -0.31
GPC3-202ENST00000394299 SPRR3Q9UBC9 169 aa13.11□□□□□ -0.31
GPC3-202ENST00000394299 SCP2D1Q9UJQ7 156 aa13.11□□□□□ -0.31
GPC3-202ENST00000394299 MCTS1Q9ULC4 181 aaKnown RBP13.11□□□□□ -0.31
GPC3-202ENST00000394299 TMEM82A0PJX8 343 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 NAT2P11245 290 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 EDN3P14138 238 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 MGMTP16455 207 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 S100A1P23297 94 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 MTCP1P56278 107 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 TCF15Q12870 199 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 KRTAP27-1Q3LI81 207 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 RNASE10Q5GAN6 216 aaKnown RBP13.1□□□□□ -0.31
GPC3-202ENST00000394299 DCAF12L2Q5VW00 463 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 Q6ZSR3 168 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 OR2W3Q7Z3T1 314 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 FDCSPQ8NFU4 85 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 HAS2Q92819 552 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 IFT46Q9NQC8 304 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 EMC3Q9P0I2 261 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 ZNF230Q9UIE0 474 aaPredicted RBP13.1□□□□□ -0.31
GPC3-202ENST00000394299 VSIG4Q9Y279 399 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 DSPP15924 2871 aaKnown RBP13.1□□□□□ -0.31
GPC3-202ENST00000394299 SNRPGP15A8MWD9 76 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 CHRM2P08172 466 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 CPN1P15169 458 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 HIST1H1DP16402 221 aaKnown RBP13.1□□□□□ -0.31
GPC3-202ENST00000394299 GNG2P59768 71 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 BATF2Q8N1L9 274 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 PNLDC1Q8NA58 520 aaKnown RBP13.1□□□□□ -0.31
GPC3-202ENST00000394299 TRAF4Q9BUZ4 470 aaPredicted RBP13.1□□□□□ -0.31
GPC3-202ENST00000394299 PRSS50Q9UI38 385 aa13.1□□□□□ -0.31
GPC3-202ENST00000394299 OR4E1P0C645 316 aa13.09□□□□□ -0.31
GPC3-202ENST00000394299 TMEM225BP0DP42 221 aa13.09□□□□□ -0.31
GPC3-202ENST00000394299 HOXD11P31277 338 aaPredicted RBP13.09□□□□□ -0.31
GPC3-202ENST00000394299 RPS27AP62979 156 aaKnown RBP13.09□□□□□ -0.31
GPC3-202ENST00000394299 FAM3AP98173 230 aa13.09□□□□□ -0.31
GPC3-202ENST00000394299 RIPPLY1Q0D2K3 151 aa13.09□□□□□ -0.31
GPC3-202ENST00000394299 CDH26Q8IXH8 852 aa13.09□□□□□ -0.31
GPC3-202ENST00000394299 RADILQ96JH8 1075 aa13.09□□□□□ -0.31
GPC3-202ENST00000394299 GON7Q9BXV9 100 aa13.09□□□□□ -0.31
GPC3-202ENST00000394299 MGAQ8IWI9 3026 aa13.09□□□□□ -0.31
GPC3-202ENST00000394299 OR2AT4A6NND4 320 aa13.09□□□□□ -0.31
GPC3-202ENST00000394299 GOSR2O14653 212 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms