RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 GAR1Q9NY12 217 aaKnown RBP9.88□□□□□ -0.83
CUX1-204ENST00000393824 IKZF2Q9UKS7 526 aa9.88□□□□□ -0.83
CUX1-204ENST00000393824 RARRES3Q9UL19 164 aa9.88□□□□□ -0.83
CUX1-204ENST00000393824 PRKNO60260 465 aaPredicted RBP9.87□□□□□ -0.83
CUX1-204ENST00000393824 IFNA2P01563 188 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 IFNA10P01566 189 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 CSTBP04080 98 aaKnown RBP9.87□□□□□ -0.83
CUX1-204ENST00000393824 S100A2P29034 98 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 CCKBRP32239 447 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 SULT1A1P50225 295 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 UCP2P55851 309 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 TAS2R31P59538 309 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 RAB1AP62820 205 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 CDCP2Q5VXM1 449 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 PPP1R3BQ86XI6 285 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 AGBL5Q8NDL9 886 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 SVIPQ8NHG7 77 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 TSEN15Q8WW01 171 aaKnown RBP9.87□□□□□ -0.83
CUX1-204ENST00000393824 SCRT1Q9BWW7 348 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 NRSN2Q9GZP1 204 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 RAB18Q9NP72 206 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 ZNF346Q9UL40 294 aaKnown RBP9.87□□□□□ -0.83
CUX1-204ENST00000393824 MGAQ8IWI9 3026 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 H0YIG0 161 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 YIF1AO95070 293 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 MBP02144 154 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 SLC35E2P0CK97 266 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 AKR1C4P17516 323 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 SKP2Q13309 424 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 COTL1Q14019 142 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 EXOSC7Q15024 291 aaKnown RBP9.87□□□□□ -0.83
CUX1-204ENST00000393824 WDR38Q5JTN6 314 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 GLYATL3Q5SZD4 288 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 HES3Q5TGS1 186 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 TMEM268Q5VZI3 342 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 HIST2H3AQ71DI3 136 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 ADGRE4PQ86SQ3 457 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 TGIF2LXQ8IUE1 241 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 PLPP7Q8NBV4 271 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 OIT3Q8WWZ8 545 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 YPEL4Q96NS1 127 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 TSSK2Q96PF2 358 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 WDR76Q9H967 626 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 ZMAT3Q9HA38 289 aaKnown RBP9.87□□□□□ -0.83
CUX1-204ENST00000393824 PLA2G2EQ9NZK7 142 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 OR5AC2Q9NZP5 309 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 HIF3AQ9Y2N7 669 aa9.87□□□□□ -0.83
CUX1-204ENST00000393824 TMEM235A6NFC5 223 aa9.86□□□□□ -0.83
CUX1-204ENST00000393824 PROB1E7EW31 1015 aa9.86□□□□□ -0.83
CUX1-204ENST00000393824 TM4SF5O14894 197 aa9.86□□□□□ -0.83
CUX1-204ENST00000393824 CST4P01036 141 aa9.86□□□□□ -0.83
CUX1-204ENST00000393824 OR8U9P0C7N5 309 aa9.86□□□□□ -0.83
CUX1-204ENST00000393824 FGF5P12034 268 aa9.86□□□□□ -0.83
CUX1-204ENST00000393824 RNH1P13489 461 aaKnown RBP9.86□□□□□ -0.83
CUX1-204ENST00000393824 DAOP14920 347 aa9.86□□□□□ -0.83
CUX1-204ENST00000393824 MOGAT2Q3SYC2 334 aa9.86□□□□□ -0.83
CUX1-204ENST00000393824 TMEM128Q5BJH2 165 aa9.86□□□□□ -0.83
CUX1-204ENST00000393824 RPL7L1Q6DKI1 246 aaKnown RBP9.86□□□□□ -0.83
CUX1-204ENST00000393824 TMEM225Q6GV28 225 aa9.86□□□□□ -0.83
CUX1-204ENST00000393824 HEPN1Q6WQI6 88 aa9.86□□□□□ -0.83
CUX1-204ENST00000393824 Q6ZRG5 221 aa9.86□□□□□ -0.83
CUX1-204ENST00000393824 NUP54Q7Z3B4 507 aa9.86□□□□□ -0.83
CUX1-204ENST00000393824 LRRC75AQ8NAA5 344 aa9.86□□□□□ -0.83
CUX1-204ENST00000393824 OR8U1Q8NH10 309 aa9.86□□□□□ -0.83
CUX1-204ENST00000393824 ZNF563Q8TA94 476 aa9.86□□□□□ -0.83
CUX1-204ENST00000393824 S100A13Q99584 98 aa9.86□□□□□ -0.83
CUX1-204ENST00000393824 G6PC3Q9BUM1 346 aa9.86□□□□□ -0.83
CUX1-204ENST00000393824 VSX1Q9NZR4 365 aaPredicted RBP9.86□□□□□ -0.83
CUX1-204ENST00000393824 TP53TG5Q9Y2B4 290 aa9.86□□□□□ -0.83
CUX1-204ENST00000393824 LOXL2Q9Y4K0 774 aa9.86□□□□□ -0.83
CUX1-204ENST00000393824 MRPS18BQ9Y676 258 aaKnown RBP9.86□□□□□ -0.83
CUX1-204ENST00000393824 LOC100509620A0A075B734 347 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 BTBD17A6NE02 478 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 H3BSH0 61 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 M0R036 132 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 FTH1P19P0C7X4 201 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 PNMTP11086 282 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 IGFBP3P17936 291 aaPredicted RBP9.85□□□□□ -0.83
CUX1-204ENST00000393824 TBPP20226 339 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 SNCAP37840 140 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 PSG6Q00889 435 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 IL15RAQ13261 267 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 KIAA0141Q14154 515 aaPredicted RBP9.85□□□□□ -0.83
CUX1-204ENST00000393824 EIF2B1Q14232 305 aaKnown RBP9.85□□□□□ -0.83
CUX1-204ENST00000393824 ODF4Q2M2E3 257 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 HYAL4Q2M3T9 481 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 ZNF260Q3ZCT1 412 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 NKAIN1Q4KMZ8 207 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 CDPF1Q6NVV7 123 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 LANCL3Q6ZV70 420 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 ZNF321PQ8N8H1 164 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 OR52R1Q8NGF1 315 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 C3orf49Q96BT1 292 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 NUDT9Q9BW91 350 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 MRPL37Q9BZE1 423 aaKnown RBP9.85□□□□□ -0.83
CUX1-204ENST00000393824 METTL9Q9H1A3 318 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 FLVCR1Q9Y5Y0 555 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 IGHV3-20A0A0C4DH32 117 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 DCTN6O00399 190 aa9.85□□□□□ -0.83
CUX1-204ENST00000393824 MT-CO3P00414 261 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms