RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 LRRC3CA6NJW4 275 aa9.07□□□□□ -0.96
COL6A3-205ENST00000392004 TMEM200CA6NKL6 621 aa9.07□□□□□ -0.96
COL6A3-205ENST00000392004 PDCD5O14737 125 aa9.07□□□□□ -0.96
COL6A3-205ENST00000392004 PHYHO14832 338 aa9.07□□□□□ -0.96
COL6A3-205ENST00000392004 BGLAPP02818 100 aa9.07□□□□□ -0.96
COL6A3-205ENST00000392004 BDH1Q02338 343 aa9.07□□□□□ -0.96
COL6A3-205ENST00000392004 TMEM108Q6UXF1 575 aa9.07□□□□□ -0.96
COL6A3-205ENST00000392004 POC1BQ8TC44 478 aa9.07□□□□□ -0.96
COL6A3-205ENST00000392004 C20orf85Q9H1P6 137 aa9.07□□□□□ -0.96
COL6A3-205ENST00000392004 BANF2Q9H503 90 aa9.07□□□□□ -0.96
COL6A3-205ENST00000392004 NOX4Q9NPH5 578 aa9.07□□□□□ -0.96
COL6A3-205ENST00000392004 PLXND1Q9Y4D7 1925 aa9.07□□□□□ -0.96
COL6A3-205ENST00000392004 PLXNA2O75051 1894 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 IGKV1D-42A0A075B6H8 117 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 LOC107986453A0A1B0GWG9 222 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 METTL21EPA6NDL7 271 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 POM121CA8CG34 1229 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 BHLHE40O14503 412 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 WISP2O76076 250 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 APOC3P02656 99 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 RAB3AP20336 220 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 CA6P23280 308 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 MST1P26927 711 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 THBS2P35442 1172 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 IKZF1Q13422 519 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 ZFP62Q8NB50 900 aaPredicted RBP9.06□□□□□ -0.96
COL6A3-205ENST00000392004 PTP4A1Q93096 173 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 C3orf80F5H4A9 247 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 NXPH2O95156 264 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 NFYAP23511 347 aaPredicted RBP9.06□□□□□ -0.96
COL6A3-205ENST00000392004 RBM39Q14498 530 aaKnown RBP9.06□□□□□ -0.96
COL6A3-205ENST00000392004 PPA1Q15181 289 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 TUSC1Q2TAM9 212 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 AADACL4Q5VUY2 407 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 RGS7BPQ6MZT1 257 aaPredicted RBP9.06□□□□□ -0.96
COL6A3-205ENST00000392004 HAGHLQ6PII5 290 aaPredicted RBP9.06□□□□□ -0.96
COL6A3-205ENST00000392004 SLC22A24Q8N4F4 322 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 OR1J2Q8NGS2 313 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 YIPF5Q969M3 257 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 MICU1Q9BPX6 476 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 SAV1Q9H4B6 383 aaPredicted RBP9.06□□□□□ -0.96
COL6A3-205ENST00000392004 GPR160Q9UJ42 338 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 LAMP3Q9UQV4 416 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 EXOGQ9Y2C4 368 aaKnown RBP9.06□□□□□ -0.96
COL6A3-205ENST00000392004 FAM221AA4D161 298 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 AHRRA9YTQ3 701 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 SNRPBP14678 240 aaKnown RBP9.06□□□□□ -0.96
COL6A3-205ENST00000392004 NDUFB7P17568 137 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 PSMB1P20618 241 aaKnown RBP9.06□□□□□ -0.96
COL6A3-205ENST00000392004 BTCP35070 178 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 FOXG1P55316 489 aaPredicted RBP9.06□□□□□ -0.96
COL6A3-205ENST00000392004 RAP2BP61225 183 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 SEC61A1P61619 476 aaKnown RBP9.06□□□□□ -0.96
COL6A3-205ENST00000392004 HLXQ14774 488 aaPredicted RBP9.06□□□□□ -0.96
COL6A3-205ENST00000392004 OR8G1Q15617 311 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 FIP1L1Q6UN15 594 aaKnown RBP9.06□□□□□ -0.96
COL6A3-205ENST00000392004 ALKAL2Q6UX46 152 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 PDZD9Q8IXQ8 264 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 MKXQ8IYA7 352 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 RBMXL3Q8N7X1 1067 aaKnown RBP9.06□□□□□ -0.96
COL6A3-205ENST00000392004 OR51T1Q8NGJ9 327 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 NELFAQ9H3P2 528 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 GPR35Q9HC97 309 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 NRIP3Q9NQ35 241 aa9.06□□□□□ -0.96
COL6A3-205ENST00000392004 TRAV18A0A075B6X5 111 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 ZNF850A8MQ14 1090 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 ARPC1BO15143 372 aaKnown RBP9.05□□□□□ -0.96
COL6A3-205ENST00000392004 ECDO95905 644 aaPredicted RBP9.05□□□□□ -0.96
COL6A3-205ENST00000392004 ZNF35P13682 527 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 GDNFP39905 211 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 MMP15P51511 669 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 DEFA5Q01523 94 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 ZNF718Q3SXZ3 478 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 ELFN2Q5R3F8 820 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 ZNF684Q5T5D7 378 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 MDP1Q86V88 176 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 ZNF441Q8N8Z8 693 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 OR1F12Q8NHA8 337 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 GINS4Q9BRT9 223 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 ARL6Q9H0F7 186 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 ABRACLQ9P1F3 81 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 FXYD6-FXYD2A0A087WZ82 144 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 HS3ST1O14792 307 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 CREBL2O60519 120 aaPredicted RBP9.05□□□□□ -0.96
COL6A3-205ENST00000392004 VEGFCP49767 419 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 CCL8P80075 99 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 DYRK1AQ13627 763 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 ZNF273Q14593 569 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 FXYD6Q9H0Q3 95 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 HSPB2A8KAH6 182 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 LGALS8O00214 317 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 EFNA2O43921 213 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 RGS11O94810 467 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 IGHA1P01876 353 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 HPXP02790 462 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 CYC1P08574 325 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 HSPB2Q16082 182 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 SLC25A35Q3KQZ1 300 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 NAA40Q86UY6 237 aa9.05□□□□□ -0.96
COL6A3-205ENST00000392004 ASB17Q8WXJ9 295 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms