RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 TAAR3PQ9P1P4 343 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 HSBP1O75506 76 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 PRRX1P54821 245 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 FAM3AP98173 230 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 FUT7Q11130 342 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 TMEM128Q5BJH2 165 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 UQCC3Q6UW78 93 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 COMMD1Q8N668 190 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 OR2G2Q8NGZ5 317 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 SPACA9Q96E40 222 aaPredicted RBP11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 B9D1Q9UPM9 204 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 SEMG1P04279 462 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 CCL7P80098 99 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 TOMM34Q15785 309 aaPredicted RBP11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 FFAR4Q5NUL3 377 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 FAAP20Q6NZ36 180 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 TMPRSS11FQ6ZWK6 438 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 RPEQ96AT9 228 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 ATP5SQ99766 215 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 P4HTMQ9NXG6 502 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 UPK1AO00322 258 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 MEOX1P50221 254 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 GNG3P63215 75 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 PPP1R1CQ8WVI7 109 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 SPSB1Q96BD6 273 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 FBXO17Q96EF6 278 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 LINC00615Q96LM1 132 aaPredicted RBP11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 SLC22A13Q9Y226 551 aa11.52□□□□□ -0.57
CCDC88C-204ENST00000389857 PNPP00491 289 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 SLC25A5P05141 298 aaKnown RBP11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 ACVR1Q04771 509 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 FOXF1Q12946 379 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 HFEQ30201 348 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 SPATA46Q5T0L3 261 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 VASH2Q86V25 355 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 PECRQ9BY49 303 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 PARD6AQ9NPB6 346 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 CBY3A6NI87 242 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 OR1C1Q15619 314 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 ZNF766Q5HY98 468 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 CADM3Q8N126 398 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 OR2M3Q8NG83 312 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 ISG20L2Q9H9L3 353 aaKnown RBP11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 F5H697 171 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 K7EQS6 105 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 SRP14P37108 136 aaKnown RBP11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 PDFQ9HBH1 243 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 PRRT4C9JH25 899 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 M0R1X1 148 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 FPR2P25090 351 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 ACSM6Q6P461 480 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 MZB1Q8WU39 189 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 FLVCR2Q9UPI3 526 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 FUT3P21217 361 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 SDHBP21912 280 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 OR2W3Q7Z3T1 314 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 OR5D13Q8NGL4 314 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 EXTL1Q92935 676 aa11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 ZMAT5Q9UDW3 170 aaKnown RBP11.51□□□□□ -0.57
CCDC88C-204ENST00000389857 A0A1W2PN81 502 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 CHRNA7P36544 502 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 RFC3P40938 356 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 PAQR6Q6TCH4 344 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 FOXB1Q99853 325 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 GAL3ST2Q9H3Q3 398 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 THYN1Q9P016 225 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 LILRA5A6NI73 299 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 FAHP16930 419 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 GALR1P47211 349 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 CEACAM16Q2WEN9 425 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 TCTN3Q6NUS6 607 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 ANKRD33Q7Z3H0 272 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 OR4C16Q8NGL9 310 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 ANGPTL6Q8NI99 470 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 POMT2Q9UKY4 750 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 CIDEAO60543 219 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 CEACAM6P40199 344 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 UBE2MP61081 183 aaKnown RBP11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 ZNF154Q13106 437 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 TMEM211Q6ICI0 200 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 ZNF429Q86V71 674 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 NTNG2Q96CW9 530 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 FOXQ1Q9C009 403 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 A0A087WUJ7 227 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 FUCA1P04066 466 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 CDAP32320 146 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 IQCJQ1A5X6 159 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 MYPOPQ86VE0 399 aaPredicted RBP11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 SLC17A5Q9NRA2 495 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 PTBP3O95758 552 aaKnown RBP11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 PGA3P0DJD8 388 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 GNG4P50150 75 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 GNG10P50151 68 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 ARRDC1Q8N5I2 433 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 WDR31Q8NA23 367 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 OR1L4Q8NGR5 311 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 AKR7LQ8NHP1 331 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 LYRM2Q9NU23 88 aaPredicted RBP11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 ICAM5Q9UMF0 924 aa11.5□□□□□ -0.57
CCDC88C-204ENST00000389857 SLC45A2Q9UMX9 530 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms