RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 ELMOD3Q96FG2 381 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 FAHD2AQ96GK7 314 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 SPACA5Q96QH8 159 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 CHST5Q9GZS9 411 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 MPC2O95563 127 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 ZNF35P13682 527 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 POU3F2P20265 443 aaPredicted RBP18.86■□□□□ 0.61
TRIM54-202ENST00000380075 ANOS1P23352 680 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 CBX5P45973 191 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 OC90Q02509 493 aaPredicted RBP18.86■□□□□ 0.61
TRIM54-202ENST00000380075 SCRN3Q0VDG4 424 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 RSPO1Q2MKA7 263 aaPredicted RBP18.86■□□□□ 0.61
TRIM54-202ENST00000380075 RIPPLY2Q5TAB7 128 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 C11orf88Q6PI97 169 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 TMED4Q7Z7H5 227 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 ADAMTS17Q8TE56 1095 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 CPNE4Q96A23 557 aaPredicted RBP18.86■□□□□ 0.61
TRIM54-202ENST00000380075 FBXO17Q96EF6 278 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 MAB21L2Q9Y586 359 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 OR6C65A6NJZ3 312 aa18.85■□□□□ 0.61
TRIM54-202ENST00000380075 MCRIP1C9JLW8 97 aa18.85■□□□□ 0.61
TRIM54-202ENST00000380075 E9PLN8 166 aa18.85■□□□□ 0.61
TRIM54-202ENST00000380075 RFPL3SP0C7P2 107 aa18.85■□□□□ 0.61
TRIM54-202ENST00000380075 NAT1P18440 290 aa18.85■□□□□ 0.61
TRIM54-202ENST00000380075 CRYGSP22914 178 aa18.85■□□□□ 0.61
TRIM54-202ENST00000380075 SEC61A1P61619 476 aaKnown RBP18.85■□□□□ 0.61
TRIM54-202ENST00000380075 GK2Q14410 553 aaPredicted RBP18.85■□□□□ 0.61
TRIM54-202ENST00000380075 KISS1Q15726 138 aa18.85■□□□□ 0.61
TRIM54-202ENST00000380075 AAED1Q7RTV5 226 aa18.85■□□□□ 0.61
TRIM54-202ENST00000380075 TMEM104Q8NE00 496 aa18.85■□□□□ 0.61
TRIM54-202ENST00000380075 OR10D3Q8NH80 312 aa18.85■□□□□ 0.61
TRIM54-202ENST00000380075 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP18.85■□□□□ 0.61
TRIM54-202ENST00000380075 TMEM38BQ9NVV0 291 aa18.85■□□□□ 0.61
TRIM54-202ENST00000380075 KIAA1549Q9HCM3 1950 aa18.85■□□□□ 0.61
TRIM54-202ENST00000380075 A0A0A6YYD4 124 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 TUBAL3A6NHL2 446 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 ZNF891A8MT65 544 aaPredicted RBP18.84■□□□□ 0.61
TRIM54-202ENST00000380075 SGCEO43556 437 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 CXCL13O43927 109 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 TRAPPC6AO75865 159 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 GDF1P27539 372 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 PTGFRP43088 359 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 EXOSC2Q13868 293 aaKnown RBP18.84■□□□□ 0.61
TRIM54-202ENST00000380075 ARL6IP1Q15041 203 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 C2orf68Q2NKX9 166 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 SLC25A42Q86VD7 318 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 OR8H3Q8N146 312 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 FAM89BQ8N5H3 189 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 NICN1Q9BSH3 213 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 DEPPQ9NTK1 212 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 ZNF224Q9NZL3 707 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 KCNK7Q9Y2U2 307 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 SSX5O60225 188 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 IFNA6P05013 189 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 NAT2P11245 290 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 CXCL2P19875 107 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 HYAL4Q2M3T9 481 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 CLLU1Q5K131 121 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 WIPI1Q5MNZ9 446 aaPredicted RBP18.84■□□□□ 0.61
TRIM54-202ENST00000380075 CD163Q86VB7 1156 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 GVQW1Q8N7I0 195 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 STEAP2Q8NFT2 490 aa18.84■□□□□ 0.61
TRIM54-202ENST00000380075 THOC3Q96J01 351 aaKnown RBP18.84■□□□□ 0.61
TRIM54-202ENST00000380075 CRTAPO75718 401 aaPredicted RBP18.83■□□□□ 0.61
TRIM54-202ENST00000380075 HRH1P35367 487 aa18.83■□□□□ 0.61
TRIM54-202ENST00000380075 GFRA1P56159 465 aa18.83■□□□□ 0.61
TRIM54-202ENST00000380075 RPS27AP62979 156 aaKnown RBP18.83■□□□□ 0.61
TRIM54-202ENST00000380075 FOXO1Q12778 655 aa18.83■□□□□ 0.61
TRIM54-202ENST00000380075 DHRS2Q13268 280 aa18.83■□□□□ 0.61
TRIM54-202ENST00000380075 NKPD1Q17RQ9 610 aa18.83■□□□□ 0.61
TRIM54-202ENST00000380075 RNF144BQ7Z419 303 aa18.83■□□□□ 0.61
TRIM54-202ENST00000380075 CRLF2Q9HC73 371 aa18.83■□□□□ 0.61
TRIM54-202ENST00000380075 LRFN1Q9P244 771 aa18.83■□□□□ 0.61
TRIM54-202ENST00000380075 ABI3Q9P2A4 366 aa18.83■□□□□ 0.61
TRIM54-202ENST00000380075 ZNF391Q9UJN7 358 aa18.83■□□□□ 0.61
TRIM54-202ENST00000380075 MFNGO00587 321 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 SYNGR3O43761 229 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 CYTIPO60759 359 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 SIX6O95475 246 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 OR3A3P47888 321 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 SRSF4Q08170 494 aaKnown RBP18.82■□□□□ 0.6
TRIM54-202ENST00000380075 SLC16A14Q7RTX9 510 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 HAS2Q92819 552 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 CPNE2Q96FN4 548 aaPredicted RBP18.82■□□□□ 0.6
TRIM54-202ENST00000380075 FAM173AQ9BQD7 235 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 OCSTAMPQ9BR26 566 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 VSIG4Q9Y279 399 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 PIGLQ9Y2B2 252 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 AUP1Q9Y679 476 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 C5orf63A6NC05 138 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 K7ENP7 123 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 CD96P40200 585 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 TMPRSS3P57727 454 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 UBE2MP61081 183 aaKnown RBP18.82■□□□□ 0.6
TRIM54-202ENST00000380075 PCBD1P61457 104 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 FGL1Q08830 312 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 ESCO2Q56NI9 601 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 PLAC9Q5JTB6 97 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 VAX1Q5SQQ9 334 aa18.82■□□□□ 0.6
TRIM54-202ENST00000380075 RTL6Q6ICC9 239 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms