RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 FLRT3Q9NZU0 649 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 NAT8BQ9UHF3 227 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 DEFB108AA8MXU0 73 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 GPANK1O95872 356 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 GPX1P07203 203 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF30P17039 623 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 HRH2P25021 359 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 P2RY2P41231 377 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 SRPXP78539 464 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 C18orf63Q68DL7 685 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 IRF2BP2Q7Z5L9 587 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 FAM71AQ8IYT1 594 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 FAM71CQ8NEG0 241 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 MDGA1Q8NFP4 955 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 OR13J1Q8NGT2 312 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 SLC35B2Q8TB61 432 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 MARCH1Q8TCQ1 289 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 YIPF5Q969M3 257 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 PDCD2LQ9BRP1 358 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 PRR14Q9BWN1 585 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 ZMAT3Q9HA38 289 aaKnown RBP4.22□□□□□ -1.73
SCN1A-202ENST00000375405 C5AR2Q9P296 337 aa4.22□□□□□ -1.73
SCN1A-202ENST00000375405 PXDNLA1KZ92 1463 aa4.21□□□□□ -1.73
SCN1A-202ENST00000375405 ALKQ9UM73 1620 aa4.21□□□□□ -1.73
SCN1A-202ENST00000375405 A0A1W2PN81 502 aa4.21□□□□□ -1.73
SCN1A-202ENST00000375405 C7orf72A4D263 438 aa4.21□□□□□ -1.73
SCN1A-202ENST00000375405 MFNGO00587 321 aa4.21□□□□□ -1.73
SCN1A-202ENST00000375405 FGF17O60258 216 aa4.21□□□□□ -1.73
SCN1A-202ENST00000375405 HIST1H1BP16401 226 aaKnown RBP4.21□□□□□ -1.73
SCN1A-202ENST00000375405 CALCRP30988 508 aa4.21□□□□□ -1.73
SCN1A-202ENST00000375405 CHRNA7P36544 502 aa4.21□□□□□ -1.73
SCN1A-202ENST00000375405 LIPAP38571 399 aa4.21□□□□□ -1.73
SCN1A-202ENST00000375405 CD96P40200 585 aa4.21□□□□□ -1.73
SCN1A-202ENST00000375405 DLX6P56179 175 aa4.21□□□□□ -1.73
SCN1A-202ENST00000375405 SOX8P57073 446 aa4.21□□□□□ -1.73
SCN1A-202ENST00000375405 UFM1P61960 85 aa4.21□□□□□ -1.73
SCN1A-202ENST00000375405 HMGN3Q15651 99 aa4.21□□□□□ -1.73
SCN1A-202ENST00000375405 OR2A2Q6IF42 318 aa4.21□□□□□ -1.73
SCN1A-202ENST00000375405 LINC00346Q8IVM7 164 aa4.21□□□□□ -1.73
SCN1A-202ENST00000375405 CANT1Q8WVQ1 401 aa4.21□□□□□ -1.73
SCN1A-202ENST00000375405 ADAT1Q9BUB4 502 aaKnown RBP4.21□□□□□ -1.73
SCN1A-202ENST00000375405 ZC3H13Q5T200 1668 aaKnown RBP4.21□□□□□ -1.73
SCN1A-202ENST00000375405 MIA3Q5JRA6 1907 aa4.21□□□□□ -1.73
SCN1A-202ENST00000375405 TRGV2A0A075B6R0 118 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 A0A1B0GU03 582 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 CLDN24A6NM45 220 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 C3orf80F5H4A9 247 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 TNFRSF1AP19438 455 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 CTBSQ01459 385 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 TOMM34Q15785 309 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-202ENST00000375405 MICBQ29980 383 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 NSUN5P1Q3KNT7 163 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 RPS26P11Q5JNZ5 115 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-202ENST00000375405 DCAF12L1Q5VU92 463 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 RDH5Q92781 318 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 HIST1H4GQ99525 98 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 C2orf88Q9BSF0 95 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 ASB4Q9Y574 426 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 PHLDA3Q9Y5J5 127 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 SMIM35A0A1B0GVV1 85 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 NKX2-8O15522 239 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 CREG1O75629 220 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 ACP2P11117 423 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 FABP2P12104 132 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 SSTR2P30874 369 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 GNG4P50150 75 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 LILRA4P59901 499 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 ERVPABLB-1P60509 514 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 PPP1CBP62140 327 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 REEP5Q00765 189 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 RIPPLY1Q0D2K3 151 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 FUT7Q11130 342 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 TOMM20LQ6UXN7 152 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 ADGRE4PQ86SQ3 457 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 C2orf15Q8WU43 125 aaKnown RBP4.21□□□□□ -1.74
SCN1A-202ENST00000375405 SARAFQ96BY9 339 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 GALNT14Q96FL9 552 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 TAAR6Q96RI8 345 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 TRAV27A0A087WT01 109 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 IGHV3-15A0A0B4J1V0 119 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 OR2W5A6NFC9 320 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 CNR1P21554 472 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 C5AR1P21730 350 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 UBE2L3P68036 154 aaKnown RBP4.21□□□□□ -1.74
SCN1A-202ENST00000375405 IL24Q13007 206 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 RUNX3Q13761 415 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 HLXQ14774 488 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-202ENST00000375405 TMEM211Q6ICI0 200 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 C22orf39Q6P5X5 142 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 HOGA1Q86XE5 327 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 B3GNT7Q8NFL0 401 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 ADAMTS19Q8TE59 1207 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 SLC35B4Q969S0 331 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 FCRL5Q96RD9 977 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 KCNMB3Q9NPA1 279 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 FBXL2Q9UKC9 423 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 ZDHHC8Q9ULC8 765 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 CSNK1G3Q9Y6M4 447 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 TNFSF11O14788 317 aa4.21□□□□□ -1.74
SCN1A-202ENST00000375405 TAAR5O14804 337 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms