RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 PIGCQ92535 297 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 ITFG2Q969R8 447 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 SLC25A28Q96A46 364 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 C12orf43Q96C57 262 aaKnown RBP17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 TBX15Q96SF7 602 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 PKP2Q99959 881 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 PCGF1Q9BSM1 259 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 MROQ9BYG7 248 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 FGF23Q9GZV9 251 aaPredicted RBP17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 PRDM13Q9H4Q3 707 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 KRT84Q9NSB2 600 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 COPS3Q9UNS2 423 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 TMEM14AQ9Y6G1 99 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 A0A0U1RQV5 110 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 TMEM269A0A1B0GVZ9 245 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 PRR32B1ATL7 298 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 G3V2T6 193 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 PSMD9O00233 223 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 ZNF254O75437 659 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 ATP5HO75947 161 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 TOX4O94842 621 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 FASP25445 335 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 ELF3P78545 371 aaPredicted RBP17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 EFNB1P98172 346 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 FOXL1Q12952 345 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 WDR38Q5JTN6 314 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 SLX4IPQ5VYV7 408 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 KDM4DQ6B0I6 523 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 ZNF679Q8IYX0 411 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 HPSE2Q8WWQ2 592 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 ASB17Q8WXJ9 295 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 SEH1LQ96EE3 360 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 DUS3LQ96G46 650 aaKnown RBP17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 RNF170Q96K19 258 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 WDFY2Q96P53 400 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 OR8B4Q96RC9 309 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 CCL13Q99616 98 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 AP4S1Q9Y587 144 aa17.96■□□□□ 0.47
CCDC28B-201ENST00000373602 TENM1Q9UKZ4 2725 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 MDFIC2A0A1B0GVS7 189 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 A0A1B0GW55 424 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 ZAR1LA6NP61 321 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 DUX4L2P0CJ85 424 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 DUX4L3P0CJ86 424 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 DUX4L4P0CJ87 422 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 DUX4L5P0CJ88 424 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 DUX4L6P0CJ89 424 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 DUX4L7P0CJ90 424 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 EPHA2P29317 976 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 MAP2K3P46734 347 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 DEFB112Q30KQ8 113 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 METTL11BQ5VVY1 283 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 DUX4L9Q6RFH8 374 aaPredicted RBP17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 MEPCEQ7L2J0 689 aaKnown RBP17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 SLC36A1Q7Z2H8 476 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 BCDIN3DQ7Z5W3 292 aaKnown RBP17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 ZDHHC23Q8IYP9 409 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 SCCPDHQ8NBX0 429 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 ST8SIA4Q92187 359 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 RPL3LQ92901 407 aaKnown RBP17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 CNN2Q99439 309 aaKnown RBP17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 PBOV1Q9GZY1 135 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 GABARAPL1Q9H0R8 117 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 SIRPDQ9H106 197 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 DUX4Q9UBX2 424 aa17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 RPUSD1Q9UJJ7 312 aaKnown RBP17.95■□□□□ 0.46
CCDC28B-201ENST00000373602 CENPVL3A0A0U1RRI6 287 aa17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 ZNF816-ZNF321PA0A0X1KG74 233 aa17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 M0R129 80 aa17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 IGLV3-1P01715 115 aa17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 ATP6V1B1P15313 513 aa17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 AMY2BP19961 511 aa17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 ATPAF1Q5TC12 328 aaPredicted RBP17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 AADACL4Q5VUY2 407 aa17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 C1orf146Q5VVC0 180 aa17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 NXNL2Q5VZ03 156 aa17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 C12orf73Q69YU5 71 aa17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 KCTD8Q6ZWB6 473 aa17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 ZDHHC13Q8IUH4 622 aa17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 FGFRL1Q8N441 504 aa17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 FAM216BQ8N7L0 139 aa17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 TCEANCQ8N8B7 351 aa17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 FAM81AQ8TBF8 368 aa17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 TMEM163Q8TC26 289 aa17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 HIST1H2AAQ96QV6 131 aa17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 HAO2Q9NYQ3 351 aa17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 H2AFY2Q9P0M6 372 aaPredicted RBP17.94■□□□□ 0.46
CCDC28B-201ENST00000373602 SLC22A31A6NKX4 558 aa17.93■□□□□ 0.46
CCDC28B-201ENST00000373602 TGM4P49221 684 aa17.93■□□□□ 0.46
CCDC28B-201ENST00000373602 RIDAP52758 137 aaKnown RBP17.93■□□□□ 0.46
CCDC28B-201ENST00000373602 ARF6P62330 175 aa17.93■□□□□ 0.46
CCDC28B-201ENST00000373602 PDCD1Q15116 288 aa17.93■□□□□ 0.46
CCDC28B-201ENST00000373602 ZNF829Q3KNS6 432 aaPredicted RBP17.93■□□□□ 0.46
CCDC28B-201ENST00000373602 RUSC1-AS1Q66K80 236 aa17.93■□□□□ 0.46
CCDC28B-201ENST00000373602 STUMQ69YW2 141 aa17.93■□□□□ 0.46
CCDC28B-201ENST00000373602 AMIGO2Q86SJ2 522 aa17.93■□□□□ 0.46
CCDC28B-201ENST00000373602 LY6G5BQ8NDX9 201 aa17.93■□□□□ 0.46
CCDC28B-201ENST00000373602 ZDHHC16Q969W1 377 aa17.93■□□□□ 0.46
CCDC28B-201ENST00000373602 RAB3IPQ96QF0 476 aaPredicted RBP17.93■□□□□ 0.46
CCDC28B-201ENST00000373602 TTTY10Q9BZA0 68 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms