RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 SYNGR4O95473 234 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 WNT11O96014 354 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 MSR1P21757 451 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 MMP16P51512 607 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 RAB11BQ15907 218 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 DEFB109BQ30KR1 87 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 PHYHD1Q5SRE7 291 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 STEAP1BQ6NZ63 245 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 ZNF704Q6ZNC4 412 aaPredicted RBP11.28□□□□□ -0.6
CLK3-201ENST00000345005 CFAP77Q6ZQR2 320 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 MOB3CQ70IA8 216 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 AAED1Q7RTV5 226 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 ZNF546Q86UE3 836 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 KCNRGQ8N5I3 272 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 RBM24Q9BX46 236 aaKnown RBP11.28□□□□□ -0.6
CLK3-201ENST00000345005 ULBP2Q9BZM5 246 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 SLC22A13Q9Y226 551 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 EMC9Q9Y3B6 208 aa11.28□□□□□ -0.6
CLK3-201ENST00000345005 ZNF878C9JN71 531 aa11.27□□□□□ -0.61
CLK3-201ENST00000345005 F8W036 122 aa11.27□□□□□ -0.61
CLK3-201ENST00000345005 SLC17A2O00624 439 aa11.27□□□□□ -0.61
CLK3-201ENST00000345005 ADRA2CP18825 462 aa11.27□□□□□ -0.61
CLK3-201ENST00000345005 MAGEB1P43366 347 aa11.27□□□□□ -0.61
CLK3-201ENST00000345005 SOX2P48431 317 aa11.27□□□□□ -0.61
CLK3-201ENST00000345005 CLDN12P56749 244 aa11.27□□□□□ -0.61
CLK3-201ENST00000345005 SRYQ05066 204 aa11.27□□□□□ -0.61
CLK3-201ENST00000345005 MFGE8Q08431 387 aaPredicted RBP11.27□□□□□ -0.61
CLK3-201ENST00000345005 MEF2DQ14814 521 aa11.27□□□□□ -0.61
CLK3-201ENST00000345005 TAF13Q15543 124 aa11.27□□□□□ -0.61
CLK3-201ENST00000345005 ODF4Q2M2E3 257 aa11.27□□□□□ -0.61
CLK3-201ENST00000345005 PABPC1L2AQ5JQF8 200 aa11.27□□□□□ -0.61
CLK3-201ENST00000345005 GLT8D1Q68CQ7 371 aa11.27□□□□□ -0.61
CLK3-201ENST00000345005 PGAP1Q75T13 922 aa11.27□□□□□ -0.61
CLK3-201ENST00000345005 GPX8Q8TED1 209 aa11.27□□□□□ -0.61
CLK3-201ENST00000345005 TSEN15Q8WW01 171 aaKnown RBP11.27□□□□□ -0.61
CLK3-201ENST00000345005 ST8SIA2Q92186 375 aa11.27□□□□□ -0.61
CLK3-201ENST00000345005 ZNF775Q96BV0 537 aaPredicted RBP11.27□□□□□ -0.61
CLK3-201ENST00000345005 MRPS24Q96EL2 167 aaKnown RBP11.27□□□□□ -0.61
CLK3-201ENST00000345005 ZNF845Q96IR2 970 aaPredicted RBP11.27□□□□□ -0.61
CLK3-201ENST00000345005 SMAD5Q99717 465 aaKnown RBP11.27□□□□□ -0.61
CLK3-201ENST00000345005 G6PC2Q9NQR9 355 aa11.27□□□□□ -0.61
CLK3-201ENST00000345005 ASH2LQ9UBL3 628 aa11.27□□□□□ -0.61
CLK3-201ENST00000345005 CKLFQ9UBR5 152 aa11.27□□□□□ -0.61
CLK3-201ENST00000345005 OR52A1Q9UKL2 312 aa11.27□□□□□ -0.61
CLK3-201ENST00000345005 MCTS1Q9ULC4 181 aaKnown RBP11.27□□□□□ -0.61
CLK3-201ENST00000345005 IGKV3D-15A0A087WSY6 115 aa11.26□□□□□ -0.61
CLK3-201ENST00000345005 OR14I1A6ND48 311 aa11.26□□□□□ -0.61
CLK3-201ENST00000345005 ISG15P05161 165 aa11.26□□□□□ -0.61
CLK3-201ENST00000345005 HLA-GP17693 338 aa11.26□□□□□ -0.61
CLK3-201ENST00000345005 TMEM244Q5VVB8 128 aa11.26□□□□□ -0.61
CLK3-201ENST00000345005 GPR137CQ8N3F9 429 aa11.26□□□□□ -0.61
CLK3-201ENST00000345005 OR10S1Q8NGN2 331 aa11.26□□□□□ -0.61
CLK3-201ENST00000345005 OR10K1Q8NGX5 313 aa11.26□□□□□ -0.61
CLK3-201ENST00000345005 TMEM106AQ96A25 262 aa11.26□□□□□ -0.61
CLK3-201ENST00000345005 PTX4Q96A99 478 aa11.26□□□□□ -0.61
CLK3-201ENST00000345005 TMEM45BQ96B21 275 aa11.26□□□□□ -0.61
CLK3-201ENST00000345005 TAS2R3Q9NYW6 316 aa11.26□□□□□ -0.61
CLK3-201ENST00000345005 HHLA2Q9UM44 414 aa11.26□□□□□ -0.61
CLK3-201ENST00000345005 TRAV18A0A075B6X5 111 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 TMEM82A0PJX8 343 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 CEACAM4O75871 244 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 APOC3P02656 99 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 IFNA4P05014 189 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 CD2P06729 351 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 OR4E1P0C645 316 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 ACHEP22303 614 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 HSD11B1P28845 292 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 GRB2P62993 217 aaKnown RBP11.25□□□□□ -0.61
CLK3-201ENST00000345005 MRPS34P82930 218 aaKnown RBP11.25□□□□□ -0.61
CLK3-201ENST00000345005 RIPPLY2Q5TAB7 128 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 FAHD2BQ6P2I3 314 aaPredicted RBP11.25□□□□□ -0.61
CLK3-201ENST00000345005 GABRG1Q8N1C3 465 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 GJC3Q8NFK1 279 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 OR51S1Q8NGJ8 323 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 OR52B4Q8NGK2 314 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 OR10AC1Q8NH08 325 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 CPT1CQ8TCG5 803 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 GCDHQ92947 438 aaPredicted RBP11.25□□□□□ -0.61
CLK3-201ENST00000345005 PPP1R14AQ96A00 147 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 FAM3DQ96BQ1 224 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 FAHD2AQ96GK7 314 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 DEFB127Q9H1M4 99 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 PARPBPQ9NWS1 579 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 MBD2Q9UBB5 411 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 DHDHQ9UQ10 334 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 NCOR2Q9Y618 2525 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 TRGV5A0A0B4J1U4 118 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 TRAV17A0A0B4J275 112 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 PCP4L1A6NKN8 68 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 DISC1C4P0D8 188 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 BCL2L11O43521 198 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 RAB3DO95716 219 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 MAS1P04201 325 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 MPZP25189 248 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 NTF4P34130 210 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 SORDQ00796 357 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 FAM27BQ5VT28 67 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 ACOT7LQ6ZUV0 252 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 OR51A4Q8NGJ6 313 aa11.25□□□□□ -0.61
CLK3-201ENST00000345005 ABHD3Q8WU67 409 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms