RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 LMO7DNF2Z398 122 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 AKR7A3O95154 331 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 GUSBP08236 651 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 INHBBP09529 407 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 OR13C7P0DN81 318 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 GNB3P16520 340 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 ARSJQ5FYB0 599 aaPredicted RBP9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 SLC2A9Q9NRM0 540 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 GLB1P16278 677 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 NUFIP2Q7Z417 695 aaKnown RBP9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 NHLRC2Q8NBF2 726 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 PTPRZ1P23471 2315 aaPredicted RBP9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 TOX4O94842 621 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 SLC25A4P12235 298 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 DSCR4P56555 118 aaPredicted RBP9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 ZNF121P58317 390 aaPredicted RBP9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 CLN3Q13286 438 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 MIDNQ504T8 468 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 DRAM2Q6UX65 266 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 MARCH1Q8TCQ1 289 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 ANAPC16Q96DE5 110 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 MRGPRX1Q96LB2 322 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 C4orf45Q96LM5 186 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 S1PR3Q99500 378 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 FKBP11Q9NYL4 201 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 A0A1W2PQD3 144 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 M0QZK8 103 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 GGCTO75223 188 aaKnown RBP9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 CBR3O75828 277 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 CEACAM5P06731 702 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 OVCH2Q7RTZ1 564 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 RTN4RL1Q86UN2 441 aaPredicted RBP9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 SPTBN1Q01082 2364 aaKnown RBP9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 VWA8A3KMH1 1905 aa9.26□□□□□ -0.93
CCDC88A-202ENST00000336838 TMEM272A0A1B0GTI8 110 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 UBE2G1P62253 170 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 KIRREL2Q6UWL6 708 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 OR5M1Q8NGP8 315 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 OR6S1Q8NH40 331 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 CTDSP1Q9GZU7 261 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 SHARPINQ9H0F6 387 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 TET1Q8NFU7 2136 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 C9orf170A2RU37 121 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 OTOL1A6NHN0 477 aaPredicted RBP9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 G3V3Q6 166 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 DVL1O14640 695 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 TGFBR1P36897 503 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 TMEM268Q5VZI3 342 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 OPN4Q9UHM6 478 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 MMP7P09237 267 aaPredicted RBP9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 CCKARP32238 428 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 TMEM183BQ1AE95 376 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 MUC20Q8N307 709 aaPredicted RBP9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 ST3GAL6Q9Y274 331 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 HLA-DQB1P01920 261 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 CSN1S1P47710 185 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 HABP2Q14520 560 aaPredicted RBP9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 INPP5JQ15735 1006 aaPredicted RBP9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 CPEB2Q7Z5Q1 589 aaKnown RBP9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 OR13D1Q8NGV5 346 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 RHNO1Q9BSD3 238 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 SFT2D2O95562 160 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 OCIAD1Q9NX40 245 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 MEOX2P50222 304 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 RNPS1Q15287 305 aaKnown RBP9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 OR2T2Q6IF00 324 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 OR8G2PQ6IF36 304 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 ABHD14BQ96IU4 210 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 FOXN4Q96NZ1 517 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 SIRT3Q9NTG7 399 aaPredicted RBP9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 HIST1H3AP68431 136 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 SLC25A42Q86VD7 318 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 HSD17B8Q92506 261 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 GALMQ96C23 342 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 FN3KRPQ9HA64 309 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 C17orf47Q8NEP4 570 aa9.25□□□□□ -0.93
CCDC88A-202ENST00000336838 DIDO1Q9BTC0 2240 aaKnown RBP9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 CCDC85CA6NKD9 419 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 WNT1P04628 370 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 SNRPNP63162 240 aaKnown RBP9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 ZNF750Q32MQ0 723 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 OR2B8PP59922 312 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 ERV3-1Q14264 604 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 OR8G1Q15617 311 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 BPIFCQ8NFQ6 507 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 OR5M9Q8NGP3 310 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 SEC14L6B5MCN3 397 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 NME1P15531 152 aaKnown RBP9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 EMDP50402 254 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 CDKN3Q16667 212 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 GUK1Q16774 197 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 OR52W1Q6IF63 320 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 ZNF705AQ6ZN79 300 aaPredicted RBP9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 BANF2Q9H503 90 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 SLC35D1Q9NTN3 355 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 OR5V1Q9UGF6 321 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 NEU3Q9UQ49 428 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 CLN5O75503 358 aa9.24□□□□□ -0.93
CCDC88A-202ENST00000336838 IL11RAQ14626 422 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms