RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 C11orf87Q6NUJ2 197 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 BTNL3Q6UXE8 466 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 DND1Q8IYX4 353 aaKnown RBP5.79□□□□□ -1.48
VPS35-201ENST00000299138 OR52I2Q8NH67 350 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 ZMAT3Q9HA38 289 aaKnown RBP5.79□□□□□ -1.48
VPS35-201ENST00000299138 SIRT7Q9NRC8 400 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 TNFSF18Q9UNG2 199 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 KCNMB2Q9Y691 235 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 hCG_1809904A0A1W2PP81 198 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 A0A1W2PR64 198 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 A0A1W2PRV1 198 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 TNFRSF10CO14798 259 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 CD74P04233 296 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 CD99P14209 185 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 ENPP1P22413 925 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 UBE2NP61088 152 aaKnown RBP5.79□□□□□ -1.48
VPS35-201ENST00000299138 SHHQ15465 462 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 DGAT2L6Q6ZPD8 337 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 LYG2Q86SG7 212 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 PPP1R35Q8TAP8 253 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 ATOH1Q92858 354 aaPredicted RBP5.79□□□□□ -1.48
VPS35-201ENST00000299138 DERL3Q96Q80 235 aa5.79□□□□□ -1.48
VPS35-201ENST00000299138 TECRQ9NZ01 308 aaKnown RBP5.79□□□□□ -1.48
VPS35-201ENST00000299138 TRBV23-1A0A0A0MS06 115 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 ZNF860A6NHJ4 632 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 ZNF814B7Z6K7 855 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 WDR1O75083 606 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 SEMA4FO95754 770 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 AIFM1O95831 613 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 CSN3P07498 182 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 ZNF728P0DKX0 622 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 ZNF250P15622 560 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 OR3A1P47881 315 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 FOXC1Q12948 553 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 ELOCQ15369 112 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 SAMD13Q5VXD3 122 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 MISPQ8IVT2 679 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 MUC15Q8N387 334 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 C17orf78Q8N4C9 275 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 KREMEN2Q8NCW0 462 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 PIGCQ92535 297 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 S1PR3Q99500 378 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 GPR87Q9BY21 358 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 ADGRL4Q9HBW9 690 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 NXT1Q9UKK6 140 aaKnown RBP5.78□□□□□ -1.48
VPS35-201ENST00000299138 OR1A2Q9Y585 309 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 FIGNL2A6NMB9 653 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 TGM5O43548 720 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 PLRG1O43660 514 aaKnown RBP5.78□□□□□ -1.48
VPS35-201ENST00000299138 SSSCA1O60232 199 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 EIF4E2O60573 245 aaKnown RBP5.78□□□□□ -1.48
VPS35-201ENST00000299138 SEMA7AO75326 666 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 CA2P00918 260 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 CTSAP10619 480 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 IGFBP4P22692 258 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 PSMB6P28072 239 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 ZXDBP98169 803 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 DMWDQ09019 674 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 GAMTQ14353 236 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 EXT1Q16394 746 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 ACOT6Q3I5F7 207 aaPredicted RBP5.78□□□□□ -1.48
VPS35-201ENST00000299138 DMRTA1Q5VZB9 504 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 SLC35G3Q8N808 338 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 OR9A4Q8NGU2 314 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 RPS4Y2Q8TD47 263 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 ABHD14BQ96IU4 210 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 AUNIPQ9H7T9 357 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 RAB9BQ9NP90 201 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 NPIPB13A6NJU9 1138 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 OR5B21A6NL26 309 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 NPIPB4C9JG80 1138 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 M0R3E3 92 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 FCN1O00602 326 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 TCN2P20062 427 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 FCGR2CP31995 323 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 CSNK1EP49674 416 aaKnown RBP5.78□□□□□ -1.48
VPS35-201ENST00000299138 OR5M10Q6IEU7 315 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 MAMSTRQ6ZN01 415 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 LANCL3Q6ZV70 420 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 TGIF2LXQ8IUE1 241 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 GPX8Q8TED1 209 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 PELI1Q96FA3 418 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 TAAR9Q96RI9 348 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 PLA2G12AQ9BZM1 189 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 LMAN1LQ9HAT1 526 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 ST6GALNAC2Q9UJ37 374 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 AMDHD2Q9Y303 409 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 TRBV6-7A0A0A0MS04 114 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 A0A0U1RQS6 177 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 ABHD16AO95870 558 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 ZNF888P0CJ79 500 aaPredicted RBP5.78□□□□□ -1.48
VPS35-201ENST00000299138 TMEM267Q0VDI3 215 aaPredicted RBP5.78□□□□□ -1.48
VPS35-201ENST00000299138 ZNF468Q5VIY5 522 aaPredicted RBP5.78□□□□□ -1.48
VPS35-201ENST00000299138 CMTM8Q8IZV2 173 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 SIRT6Q8N6T7 355 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 TMEM99Q8N816 258 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 CLEC1AQ8NC01 280 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 TNFRSF14Q92956 283 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 PGLYRP3Q96LB9 341 aa5.78□□□□□ -1.48
VPS35-201ENST00000299138 LRRC3BQ96PB8 259 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms