RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 CT45A2Q5DJT8 189 aa11.94□□□□□ -0.5
SKA3-201ENST00000298260 C1orf53Q5VUE5 145 aa11.94□□□□□ -0.5
SKA3-201ENST00000298260 ATG4DQ86TL0 474 aaPredicted RBP11.94□□□□□ -0.5
SKA3-201ENST00000298260 METTL27Q8N6F8 245 aaPredicted RBP11.94□□□□□ -0.5
SKA3-201ENST00000298260 BCORP1Q8N888 145 aa11.94□□□□□ -0.5
SKA3-201ENST00000298260 PATE1Q8WXA2 126 aa11.94□□□□□ -0.5
SKA3-201ENST00000298260 ARHGAP5-AS1Q96IT6 56 aa11.94□□□□□ -0.5
SKA3-201ENST00000298260 PACRGQ96M98 296 aaPredicted RBP11.94□□□□□ -0.5
SKA3-201ENST00000298260 PRRX2Q99811 253 aa11.94□□□□□ -0.5
SKA3-201ENST00000298260 IFNL4K9M1U5 179 aa11.94□□□□□ -0.5
SKA3-201ENST00000298260 SLC33A1O00400 549 aaPredicted RBP11.94□□□□□ -0.5
SKA3-201ENST00000298260 BCAT2O15382 392 aaPredicted RBP11.94□□□□□ -0.5
SKA3-201ENST00000298260 JTBO76095 146 aa11.94□□□□□ -0.5
SKA3-201ENST00000298260 SLC35A1P78382 337 aa11.94□□□□□ -0.5
SKA3-201ENST00000298260 P4HA3Q7Z4N8 544 aa11.94□□□□□ -0.5
SKA3-201ENST00000298260 DCXRQ7Z4W1 244 aa11.94□□□□□ -0.5
SKA3-201ENST00000298260 WDFY1Q8IWB7 410 aa11.94□□□□□ -0.5
SKA3-201ENST00000298260 METTL21AQ8WXB1 218 aa11.94□□□□□ -0.5
SKA3-201ENST00000298260 RSPRY1Q96DX4 576 aa11.94□□□□□ -0.5
SKA3-201ENST00000298260 FGF22Q9HCT0 170 aa11.94□□□□□ -0.5
SKA3-201ENST00000298260 OR52A1Q9UKL2 312 aa11.94□□□□□ -0.5
SKA3-201ENST00000298260 TMEM184BQ9Y519 407 aaPredicted RBP11.94□□□□□ -0.5
SKA3-201ENST00000298260 POMT1Q9Y6A1 747 aa11.94□□□□□ -0.5
SKA3-201ENST00000298260 A0A1W2PP55 124 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 PGA4P0DJD7 388 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 PGA5P0DJD9 388 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 SLC2A1P11166 492 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 APOBEC1P41238 236 aaKnown RBP11.93□□□□□ -0.5
SKA3-201ENST00000298260 TMEM50BP56557 158 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 UBE2KP61086 200 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 EIF5AP63241 154 aaKnown RBP11.93□□□□□ -0.5
SKA3-201ENST00000298260 DLK1P80370 383 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 QRFPP83859 136 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 C1orf100Q5SVJ3 147 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 TSPO2Q5TGU0 170 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 LYPD6Q86Y78 171 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 VSTM2LQ96N03 204 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 G6PC2Q9NQR9 355 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 EHFQ9NZC4 300 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 MRPS23Q9Y3D9 190 aaKnown RBP11.93□□□□□ -0.5
SKA3-201ENST00000298260 HEBP2Q9Y5Z4 205 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 ZNF705GA8MUZ8 300 aaPredicted RBP11.93□□□□□ -0.5
SKA3-201ENST00000298260 SLC31A1O15431 190 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 HLA-DOBP13765 273 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 AMY2BP19961 511 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 IGFALSP35858 605 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 DHPSP49366 369 aaPredicted RBP11.93□□□□□ -0.5
SKA3-201ENST00000298260 ARFRP1Q13795 201 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 NKAIN1Q4KMZ8 207 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 FIGLAQ6QHK4 219 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 ZNF664Q8N3J9 261 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 SLC26A10Q8NG04 563 aa11.93□□□□□ -0.5
SKA3-201ENST00000298260 ZNF107Q9UII5 783 aaPredicted RBP11.93□□□□□ -0.5
SKA3-201ENST00000298260 EDDM13A0A1B0GTR0 161 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 CLDN4O14493 209 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 TAAR5O14804 337 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 CHATP28329 748 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 OR3A4PP47883 348 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 OR3A2P47893 321 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 ZNF141Q15928 474 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 CA13Q8N1Q1 262 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 ZFP62Q8NB50 900 aaPredicted RBP11.92□□□□□ -0.5
SKA3-201ENST00000298260 OR5H2Q8NGV7 314 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 C16orf52Q8NHV5 167 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 NPRL2Q8WTW4 380 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 TM4SF19Q96DZ7 209 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 RAB11FIP5Q9BXF6 653 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 MRPL37Q9BZE1 423 aaKnown RBP11.92□□□□□ -0.5
SKA3-201ENST00000298260 UCK1Q9HA47 277 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.92□□□□□ -0.5
SKA3-201ENST00000298260 LUZP4Q9P127 313 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 PRODH2Q9UF12 536 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 PHF3Q92576 2039 aaKnown RBP11.92□□□□□ -0.5
SKA3-201ENST00000298260 IGKV1D-8A0A087WSZ0 117 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 CDC14CA4D256 554 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 H0YIG0 161 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 CA3P07451 260 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 HCKP08631 526 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 LINC00271P0C7V0 271 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 PET100P0DJ07 73 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 HPGDP15428 266 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 MPZP25189 248 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 NOVA1P51513 510 aaKnown RBP11.92□□□□□ -0.5
SKA3-201ENST00000298260 FAM3AP98173 230 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 AKR1C8PQ5T2L2 129 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 AGBL4Q5VU57 503 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 GGNBP1Q5YKI7 109 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 FDX2Q6P4F2 183 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 GLIPR1L1Q6UWM5 242 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 VITQ6UXI7 678 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 HIST1H2BLQ99880 126 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 LPAR5Q9H1C0 372 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 POLE3Q9NRF9 147 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 HSF4Q9ULV5 492 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 LIPGQ9Y5X9 500 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 VPS13AQ96RL7 3174 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 A0A087WZY1 265 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 CCDC163A0A0D9SF12 145 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 A0A1B0GWJ7 208 aa11.92□□□□□ -0.5
SKA3-201ENST00000298260 PRSS37A4D1T9 235 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms