RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 KCNG3Q8TAE7 436 aa14.6□□□□□ -0.07
VPS54-201ENST00000272322 OIT3Q8WWZ8 545 aa14.6□□□□□ -0.07
VPS54-201ENST00000272322 NECAB3Q96P71 396 aaPredicted RBP14.6□□□□□ -0.07
VPS54-201ENST00000272322 REG4Q9BYZ8 158 aa14.6□□□□□ -0.07
VPS54-201ENST00000272322 OR10A2Q9H208 303 aa14.6□□□□□ -0.07
VPS54-201ENST00000272322 PLEKHJ1Q9NW61 149 aa14.6□□□□□ -0.07
VPS54-201ENST00000272322 PILRBQ9UKJ0 227 aa14.6□□□□□ -0.07
VPS54-201ENST00000272322 A0A096LPE4 126 aa14.6□□□□□ -0.07
VPS54-201ENST00000272322 A0A1W2PPZ6 126 aa14.6□□□□□ -0.07
VPS54-201ENST00000272322 HMSDA8MTL9 139 aa14.6□□□□□ -0.07
VPS54-201ENST00000272322 HSPB6O14558 160 aa14.6□□□□□ -0.07
VPS54-201ENST00000272322 SUMO3P55854 103 aaPredicted RBP14.6□□□□□ -0.07
VPS54-201ENST00000272322 TSPO2Q5TGU0 170 aa14.6□□□□□ -0.07
VPS54-201ENST00000272322 SPINK14Q6IE38 97 aa14.6□□□□□ -0.07
VPS54-201ENST00000272322 SLC23A3Q6PIS1 610 aa14.6□□□□□ -0.07
VPS54-201ENST00000272322 SLC51BQ86UW2 128 aa14.6□□□□□ -0.07
VPS54-201ENST00000272322 LYPD6Q86Y78 171 aa14.6□□□□□ -0.07
VPS54-201ENST00000272322 TMEM105Q8N8V8 129 aa14.6□□□□□ -0.07
VPS54-201ENST00000272322 TMED6Q8WW62 240 aa14.6□□□□□ -0.07
VPS54-201ENST00000272322 CPNE2Q96FN4 548 aaPredicted RBP14.6□□□□□ -0.07
VPS54-201ENST00000272322 FAAP24Q9BTP7 215 aa14.6□□□□□ -0.07
VPS54-201ENST00000272322 D6RAR5 112 aa14.59□□□□□ -0.07
VPS54-201ENST00000272322 SULT1C2O00338 296 aa14.59□□□□□ -0.07
VPS54-201ENST00000272322 SHOXO15266 292 aa14.59□□□□□ -0.07
VPS54-201ENST00000272322 DHHO43323 396 aa14.59□□□□□ -0.07
VPS54-201ENST00000272322 MPGP29372 298 aa14.59□□□□□ -0.07
VPS54-201ENST00000272322 PTGFRP43088 359 aa14.59□□□□□ -0.07
VPS54-201ENST00000272322 CARFQ8N187 725 aa14.59□□□□□ -0.07
VPS54-201ENST00000272322 TERB2Q8NHR7 220 aa14.59□□□□□ -0.07
VPS54-201ENST00000272322 C5orf66Q9H5L9 145 aa14.59□□□□□ -0.07
VPS54-201ENST00000272322 KIAA2026Q5HYC2 2103 aa14.59□□□□□ -0.07
VPS54-201ENST00000272322 MGAQ8IWI9 3026 aa14.59□□□□□ -0.07
VPS54-201ENST00000272322 CCDC187A0A096LP49 1063 aa14.59□□□□□ -0.07
VPS54-201ENST00000272322 IGHV1-45A0A0A0MS14 117 aa14.59□□□□□ -0.07
VPS54-201ENST00000272322 LOC390937A0A1W2PQ73 354 aa14.59□□□□□ -0.07
VPS54-201ENST00000272322 TMEM14DPA8MWL7 114 aa14.59□□□□□ -0.07
VPS54-201ENST00000272322 MECP2P51608 486 aaKnown RBP14.59□□□□□ -0.07
VPS54-201ENST00000272322 PMS2CLQ68D20 193 aa14.59□□□□□ -0.07
VPS54-201ENST00000272322 SLC25A42Q86VD7 318 aa14.59□□□□□ -0.07
VPS54-201ENST00000272322 OR5M9Q8NGP3 310 aa14.59□□□□□ -0.07
VPS54-201ENST00000272322 ABHD3Q8WU67 409 aa14.59□□□□□ -0.07
VPS54-201ENST00000272322 PISDQ9UG56 409 aa14.59□□□□□ -0.07
VPS54-201ENST00000272322 MSGN1A6NI15 193 aa14.58□□□□□ -0.07
VPS54-201ENST00000272322 F12P00748 615 aaPredicted RBP14.58□□□□□ -0.07
VPS54-201ENST00000272322 CD74P04233 296 aa14.58□□□□□ -0.07
VPS54-201ENST00000272322 COX6A1P12074 109 aa14.58□□□□□ -0.07
VPS54-201ENST00000272322 ACKR3P25106 362 aa14.58□□□□□ -0.07
VPS54-201ENST00000272322 RGS19P49795 217 aa14.58□□□□□ -0.07
VPS54-201ENST00000272322 CHRFAM7AQ494W8 412 aa14.58□□□□□ -0.07
VPS54-201ENST00000272322 OR9K2Q8NGE7 335 aa14.58□□□□□ -0.07
VPS54-201ENST00000272322 GPHA2Q96T91 129 aa14.58□□□□□ -0.07
VPS54-201ENST00000272322 SLCO5A1Q9H2Y9 848 aa14.58□□□□□ -0.07
VPS54-201ENST00000272322 MED19A0JLT2 244 aaPredicted RBP14.58□□□□□ -0.08
VPS54-201ENST00000272322 RNF222A6NCQ9 220 aa14.58□□□□□ -0.08
VPS54-201ENST00000272322 MFSD2BA6NFX1 497 aa14.58□□□□□ -0.08
VPS54-201ENST00000272322 SERPINA5P05154 406 aa14.58□□□□□ -0.08
VPS54-201ENST00000272322 RSPO1Q2MKA7 263 aaPredicted RBP14.58□□□□□ -0.08
VPS54-201ENST00000272322 OPN5Q6U736 354 aa14.58□□□□□ -0.08
VPS54-201ENST00000272322 ESX1Q8N693 406 aa14.58□□□□□ -0.08
VPS54-201ENST00000272322 SPERTQ8NA61 448 aa14.58□□□□□ -0.08
VPS54-201ENST00000272322 OR14K1Q8NGZ2 314 aa14.58□□□□□ -0.08
VPS54-201ENST00000272322 PCDHGA1Q9Y5H4 931 aa14.58□□□□□ -0.08
VPS54-201ENST00000272322 M6PRP20645 277 aa14.58□□□□□ -0.08
VPS54-201ENST00000272322 PRKACBP22694 351 aa14.58□□□□□ -0.08
VPS54-201ENST00000272322 ENDOGQ14249 297 aaKnown RBP14.58□□□□□ -0.08
VPS54-201ENST00000272322 DRAM2Q6UX65 266 aa14.58□□□□□ -0.08
VPS54-201ENST00000272322 CLEC18BQ6UXF7 455 aa14.58□□□□□ -0.08
VPS54-201ENST00000272322 GJC3Q8NFK1 279 aa14.58□□□□□ -0.08
VPS54-201ENST00000272322 PXT1Q8NFP0 134 aa14.58□□□□□ -0.08
VPS54-201ENST00000272322 FGFBP3Q8TAT2 258 aa14.58□□□□□ -0.08
VPS54-201ENST00000272322 C1orf147Q96MC9 270 aaPredicted RBP14.58□□□□□ -0.08
VPS54-201ENST00000272322 URM1Q9BTM9 101 aaKnown RBP14.58□□□□□ -0.08
VPS54-201ENST00000272322 HES7Q9BYE0 225 aa14.58□□□□□ -0.08
VPS54-201ENST00000272322 A0A1B0GV50 99 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 A0A1W2PNV4 684 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 LAMTOR5O43504 91 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 CSTBP04080 98 aaKnown RBP14.57□□□□□ -0.08
VPS54-201ENST00000272322 JMJD6Q6NYC1 403 aaPredicted RBP14.57□□□□□ -0.08
VPS54-201ENST00000272322 OR2W3Q7Z3T1 314 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 NAT6Q93015 286 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 RRNAD1Q96FB5 475 aaKnown RBP14.57□□□□□ -0.08
VPS54-201ENST00000272322 PROK2Q9HC23 129 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 TECTAO75443 2155 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 B8ZZF3 427 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 IGFBP7Q16270 282 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 ANKRD55Q3KP44 614 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 TMEM88Q6PEY1 159 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 DOK3Q7L591 496 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 CLDN23Q96B33 292 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 OR5AC2Q9NZP5 309 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 HDGFL3Q9Y3E1 203 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 FBXO24O75426 580 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 LIFP15018 202 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 HGFACQ04756 655 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 WBP1Q96G27 269 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 OR10C1Q96KK4 312 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 UQCC2Q9BRT2 126 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 NELFAQ9H3P2 528 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 KIF25Q9UIL4 384 aa14.57□□□□□ -0.08
VPS54-201ENST00000272322 MCTS1Q9ULC4 181 aaKnown RBP14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms