RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 OR8H3Q8N146 312 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 FAM58AQ8N1B3 248 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 H1FXQ92522 213 aaKnown RBP12.07□□□□□ -0.48
LDLR-201ENST00000252444 ZC3HAV1LQ96H79 300 aaKnown RBP12.07□□□□□ -0.48
LDLR-201ENST00000252444 ZNF75AQ96N20 296 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 CHST2Q9Y4C5 530 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 PGA4P0DJD7 388 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 PGA3P0DJD8 388 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 ADRA2CP18825 462 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 FDX2Q6P4F2 183 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 UBE2FQ969M7 185 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 MRPL15Q9P015 296 aaKnown RBP12.07□□□□□ -0.48
LDLR-201ENST00000252444 HSPB11Q9Y547 144 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 A0A0J9YW62 118 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 hADV38S2A0JD32 116 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 GSTZ1O43708 216 aaPredicted RBP12.07□□□□□ -0.48
LDLR-201ENST00000252444 TNFAIP6P98066 277 aaPredicted RBP12.07□□□□□ -0.48
LDLR-201ENST00000252444 ESCO2Q56NI9 601 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 SIAH3Q8IW03 269 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 DCUN1D4Q92564 292 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 KIAA1456Q9P272 454 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 ST3GAL6Q9Y274 331 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 ISG15P05161 165 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 EDDM3BP56851 147 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 IL13RA2Q14627 380 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 KCNMB1Q16558 191 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 RDH10Q8IZV5 341 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 C20orf85Q9H1P6 137 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 ZNF703Q9H7S9 590 aaPredicted RBP12.07□□□□□ -0.48
LDLR-201ENST00000252444 BARX1Q9HBU1 254 aaPredicted RBP12.07□□□□□ -0.48
LDLR-201ENST00000252444 RASL12Q9NYN1 266 aa12.07□□□□□ -0.48
LDLR-201ENST00000252444 MSTNO14793 375 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 IL5P05113 134 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 RPS4XP62701 263 aaKnown RBP12.06□□□□□ -0.48
LDLR-201ENST00000252444 ZNF266Q14584 549 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 ARTNQ5T4W7 220 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 DESI1Q6ICB0 168 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 MRM2Q9UI43 246 aaKnown RBP12.06□□□□□ -0.48
LDLR-201ENST00000252444 TUBD1Q9UJT1 453 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 LOC390937A0A1W2PQ73 354 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 CEBPZOSA8MTT3 80 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 EFSO43281 561 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 PNPP00491 289 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 HBE1P02100 147 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 SLC2A1P11166 492 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 CDAP32320 146 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 PTGFRP43088 359 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 RRAS2P62070 204 aaPredicted RBP12.06□□□□□ -0.48
LDLR-201ENST00000252444 GALMQ96C23 342 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 CHCHD2Q9Y6H1 151 aaPredicted RBP12.06□□□□□ -0.48
LDLR-201ENST00000252444 NUDT19A8MXV4 375 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 SHISA8B8ZZ34 492 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 NDUFA2O43678 99 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 NDUFB7P17568 137 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 DUSP1P28562 367 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 CEACAM3P40198 252 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 SLC25A26Q70HW3 274 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 OR5AS1Q8N127 324 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 ZNF519Q8TB69 540 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 ISG20L2Q9H9L3 353 aaKnown RBP12.06□□□□□ -0.48
LDLR-201ENST00000252444 F5P12259 2224 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 BET1O15155 118 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 PDCD6O75340 191 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 GIPP09681 153 aaPredicted RBP12.06□□□□□ -0.48
LDLR-201ENST00000252444 NBL1P41271 181 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 GPR12P47775 334 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 HAGHLQ6PII5 290 aaPredicted RBP12.06□□□□□ -0.48
LDLR-201ENST00000252444 FOXRED2Q8IWF2 684 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 DMBX1Q8NFW5 382 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 NANPQ8TBE9 248 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 ZNF486Q96H40 463 aaPredicted RBP12.06□□□□□ -0.48
LDLR-201ENST00000252444 PRDM14Q9GZV8 571 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 ARL6Q9H0F7 186 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 TAAR3PQ9P1P4 343 aa12.06□□□□□ -0.48
LDLR-201ENST00000252444 ADH4P08319 380 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 FAM157BP0CG42 384 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 CPN1P15169 458 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 KISS1Q15726 138 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 PDZD9Q8IXQ8 264 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 ZBTB34Q8NCN2 500 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 GIMAP1Q8WWP7 306 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 CHST5Q9GZS9 411 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 ZDHHC8Q9ULC8 765 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 BMP5P22003 454 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 ZNF83P51522 516 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 FMODQ06828 376 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 BEX5Q5H9J7 111 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 FAHD2BQ6P2I3 314 aaPredicted RBP12.05□□□□□ -0.48
LDLR-201ENST00000252444 TMEM200AQ86VY9 491 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 FAHD2AQ96GK7 314 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 LRFN3Q9BTN0 628 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 GON7Q9BXV9 100 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 NAA50Q9GZZ1 169 aaKnown RBP12.05□□□□□ -0.48
LDLR-201ENST00000252444 ERRFI1Q9UJM3 462 aaPredicted RBP12.05□□□□□ -0.48
LDLR-201ENST00000252444 NKX2-8O15522 239 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 CRYBB2P43320 205 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 RHEBQ15382 184 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 DHRS9Q9BPW9 319 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 NAA40Q86UY6 237 aa12.05□□□□□ -0.48
LDLR-201ENST00000252444 SFTPA2Q8IWL1 248 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 622.9 ms