RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 OR4Q3Q8NH05 313 aa13.4□□□□□ -0.26
CLN3-264ENST00000637985 SPRYD4Q8WW59 207 aaPredicted RBP13.4□□□□□ -0.26
CLN3-264ENST00000637985 MMP28Q9H239 520 aa13.4□□□□□ -0.26
CLN3-264ENST00000637985 NOP16Q9Y3C1 178 aaKnown RBP13.4□□□□□ -0.26
CLN3-264ENST00000637985 COMMD3-BMI1R4GMX3 469 aa13.4□□□□□ -0.26
CLN3-264ENST00000637985 ZNF593O00488 134 aaPredicted RBP13.39□□□□□ -0.27
CLN3-264ENST00000637985 ACOT8O14734 319 aa13.39□□□□□ -0.27
CLN3-264ENST00000637985 SOX14O95416 240 aa13.39□□□□□ -0.27
CLN3-264ENST00000637985 FBP1P09467 338 aa13.39□□□□□ -0.27
CLN3-264ENST00000637985 SPI1P17947 270 aa13.39□□□□□ -0.27
CLN3-264ENST00000637985 PMELP40967 661 aa13.39□□□□□ -0.27
CLN3-264ENST00000637985 CD200P41217 278 aa13.39□□□□□ -0.27
CLN3-264ENST00000637985 RPS27P42677 84 aaKnown RBP13.39□□□□□ -0.27
CLN3-264ENST00000637985 KIR2DS4P43632 304 aa13.39□□□□□ -0.27
CLN3-264ENST00000637985 EMX1Q04741 257 aaPredicted RBP13.39□□□□□ -0.27
CLN3-264ENST00000637985 CD69Q07108 199 aa13.39□□□□□ -0.27
CLN3-264ENST00000637985 C1orf122Q6ZSJ8 110 aa13.39□□□□□ -0.27
CLN3-264ENST00000637985 MRPL21Q7Z2W9 205 aaKnown RBP13.39□□□□□ -0.27
CLN3-264ENST00000637985 MOGAT3Q86VF5 341 aa13.39□□□□□ -0.27
CLN3-264ENST00000637985 PDZD9Q8IXQ8 264 aa13.39□□□□□ -0.27
CLN3-264ENST00000637985 KLHDC1Q8N7A1 406 aa13.39□□□□□ -0.27
CLN3-264ENST00000637985 PNLDC1Q8NA58 520 aaKnown RBP13.39□□□□□ -0.27
CLN3-264ENST00000637985 OR10G2Q8NGC3 310 aa13.39□□□□□ -0.27
CLN3-264ENST00000637985 OR9Q1Q8NGQ5 310 aa13.39□□□□□ -0.27
CLN3-264ENST00000637985 CCDC124Q96CT7 223 aaKnown RBP13.39□□□□□ -0.27
CLN3-264ENST00000637985 TECTBQ96PL2 329 aa13.39□□□□□ -0.27
CLN3-264ENST00000637985 PPA2Q9H2U2 334 aa13.39□□□□□ -0.27
CLN3-264ENST00000637985 CMC2Q9NRP2 79 aa13.39□□□□□ -0.27
CLN3-264ENST00000637985 ARMC1Q9NVT9 282 aa13.39□□□□□ -0.27
CLN3-264ENST00000637985 ARRDC5A6NEK1 342 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 AQP12BA6NM10 295 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 RIIAD1A6NNX1 92 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 DYNC1I1O14576 645 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 CST1P01037 141 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 HLA-DPB1P04440 258 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 SPARCP09486 303 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 IRF2P14316 349 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 ZNF3P17036 446 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 RAD23AP54725 363 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 PRSS12P56730 875 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 MAB21L1Q13394 359 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 TAF13Q15543 124 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 SNAI3Q3KNW1 292 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 LYPD4Q6UWN0 246 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 AQP12AQ8IXF9 295 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 SPERTQ8NA61 448 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 ZNF511Q8NB15 262 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 OR5R1Q8NH85 324 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 PPP1R35Q8TAP8 253 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 TEX47Q8TBZ9 253 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 Q8TCH9 128 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 GIPC3Q8TF64 312 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 SLAMF6Q96DU3 332 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 CLPTM1LQ96KA5 538 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 FEVQ99581 238 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 KCNJ15Q99712 375 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 B9D2Q9BPU9 175 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 NIPSNAP1Q9BPW8 284 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 COPS4Q9BT78 406 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 THTPAQ9BU02 230 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 CHID1Q9BWS9 393 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 SEMA6AQ9H2E6 1030 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 OPA3Q9H6K4 179 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 CTSZQ9UBR2 303 aa13.38□□□□□ -0.27
CLN3-264ENST00000637985 IGHV3-64DA0A0J9YX35 117 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 CD300LBA8K4G0 201 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 ZNF878C9JN71 531 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 GMDSO60547 372 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 GYPBP06028 91 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 PSKH1P11801 424 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 GRK5P34947 590 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 ARF6P62330 175 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 ZNF92Q03936 586 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 OR8G1Q15617 311 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 NSUN5P1Q3KNT7 163 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 ADGRG5Q8IZF4 528 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 PLPP7Q8NBV4 271 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 WFDC9Q8NEX5 89 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 OR4F17Q8NGA8 305 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 OR6K6Q8NGW6 343 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 OR11L1Q8NGX0 322 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 NPRL2Q8WTW4 380 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 OR4F4Q96R69 305 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 CENPMQ9NSP4 180 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 MRPL15Q9P015 296 aaKnown RBP13.37□□□□□ -0.27
CLN3-264ENST00000637985 ERVK-18Q9QC07 812 aa13.37□□□□□ -0.27
CLN3-264ENST00000637985 CAB39Q9Y376 341 aaPredicted RBP13.37□□□□□ -0.27
CLN3-264ENST00000637985 WI2-2373I1.2A0A1W2PRP0 233 aa13.36□□□□□ -0.27
CLN3-264ENST00000637985 GGT3PA6NGU5 568 aa13.36□□□□□ -0.27
CLN3-264ENST00000637985 H3BN98 237 aa13.36□□□□□ -0.27
CLN3-264ENST00000637985 GNGT2O14610 69 aa13.36□□□□□ -0.27
CLN3-264ENST00000637985 CLUP10909 449 aa13.36□□□□□ -0.27
CLN3-264ENST00000637985 IGLL1P15814 213 aa13.36□□□□□ -0.27
CLN3-264ENST00000637985 CA6P23280 308 aa13.36□□□□□ -0.27
CLN3-264ENST00000637985 SLC15A1P46059 708 aa13.36□□□□□ -0.27
CLN3-264ENST00000637985 PRKXP51817 358 aa13.36□□□□□ -0.27
CLN3-264ENST00000637985 GRB2P62993 217 aaKnown RBP13.36□□□□□ -0.27
CLN3-264ENST00000637985 GLYATL3Q5SZD4 288 aa13.36□□□□□ -0.27
CLN3-264ENST00000637985 LINC01590Q5TEZ4 76 aa13.36□□□□□ -0.27
CLN3-264ENST00000637985 C19orf18Q8NEA5 215 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms