RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 SELLP14151 372 aa15.88■□□□□ 0.13
CLN3-262ENST00000637699 AMY2BP19961 511 aa15.88■□□□□ 0.13
CLN3-262ENST00000637699 DDOSTP39656 456 aa15.88■□□□□ 0.13
CLN3-262ENST00000637699 GMFBP60983 142 aa15.88■□□□□ 0.13
CLN3-262ENST00000637699 SPIBQ01892 262 aa15.88■□□□□ 0.13
CLN3-262ENST00000637699 KPRPQ5T749 579 aaPredicted RBP15.88■□□□□ 0.13
CLN3-262ENST00000637699 SAMD5Q5TGI4 173 aa15.88■□□□□ 0.13
CLN3-262ENST00000637699 C1orf122Q6ZSJ8 110 aa15.88■□□□□ 0.13
CLN3-262ENST00000637699 ZDHHC21Q8IVQ6 265 aa15.88■□□□□ 0.13
CLN3-262ENST00000637699 OR4C15Q8NGM1 316 aa15.88■□□□□ 0.13
CLN3-262ENST00000637699 SLAMF6Q96DU3 332 aa15.88■□□□□ 0.13
CLN3-262ENST00000637699 KCNJ15Q99712 375 aa15.88■□□□□ 0.13
CLN3-262ENST00000637699 DCTN5Q9BTE1 182 aa15.88■□□□□ 0.13
CLN3-262ENST00000637699 PPP1R3EQ9H7J1 279 aa15.88■□□□□ 0.13
CLN3-262ENST00000637699 DCAF13Q9NV06 445 aaKnown RBP15.88■□□□□ 0.13
CLN3-262ENST00000637699 ARL8BQ9NVJ2 186 aa15.88■□□□□ 0.13
CLN3-262ENST00000637699 FOXJ3Q9UPW0 622 aa15.88■□□□□ 0.13
CLN3-262ENST00000637699 GPR37O15354 613 aa15.87■□□□□ 0.13
CLN3-262ENST00000637699 PIN1P1O15428 100 aa15.87■□□□□ 0.13
CLN3-262ENST00000637699 XRCC2O43543 280 aa15.87■□□□□ 0.13
CLN3-262ENST00000637699 SPARCP09486 303 aa15.87■□□□□ 0.13
CLN3-262ENST00000637699 NAA10P41227 235 aaPredicted RBP15.87■□□□□ 0.13
CLN3-262ENST00000637699 SMIM11AP58511 58 aa15.87■□□□□ 0.13
CLN3-262ENST00000637699 LRRC10Q5BKY1 277 aa15.87■□□□□ 0.13
CLN3-262ENST00000637699 SLC16A9Q7RTY1 509 aa15.87■□□□□ 0.13
CLN3-262ENST00000637699 PPP1R35Q8TAP8 253 aa15.87■□□□□ 0.13
CLN3-262ENST00000637699 TNFRSF14Q92956 283 aa15.87■□□□□ 0.13
CLN3-262ENST00000637699 DMRTB1Q96MA1 342 aa15.87■□□□□ 0.13
CLN3-262ENST00000637699 SNTG1Q9NSN8 517 aa15.87■□□□□ 0.13
CLN3-262ENST00000637699 SAMD4AQ9UPU9 718 aaKnown RBP15.87■□□□□ 0.13
CLN3-262ENST00000637699 NBEAL2Q6ZNJ1 2754 aa15.86■□□□□ 0.13
CLN3-262ENST00000637699 H3BUX3 64 aa15.86■□□□□ 0.13
CLN3-262ENST00000637699 CDIPTO14735 213 aa15.86■□□□□ 0.13
CLN3-262ENST00000637699 TGM4P49221 684 aa15.86■□□□□ 0.13
CLN3-262ENST00000637699 FAM3AP98173 230 aa15.86■□□□□ 0.13
CLN3-262ENST00000637699 LY6EQ16553 131 aa15.86■□□□□ 0.13
CLN3-262ENST00000637699 OR2T4Q8NH00 348 aa15.86■□□□□ 0.13
CLN3-262ENST00000637699 SPSB4Q96A44 273 aa15.86■□□□□ 0.13
CLN3-262ENST00000637699 DDOQ99489 341 aa15.86■□□□□ 0.13
CLN3-262ENST00000637699 EGLN3Q9H6Z9 239 aa15.86■□□□□ 0.13
CLN3-262ENST00000637699 ARL2BPQ9Y2Y0 163 aa15.86■□□□□ 0.13
CLN3-262ENST00000637699 COMMD3-BMI1R4GMX3 469 aa15.86■□□□□ 0.13
CLN3-262ENST00000637699 NOTCH3Q9UM47 2321 aa15.85■□□□□ 0.13
CLN3-262ENST00000637699 TFF1P04155 84 aa15.85■□□□□ 0.13
CLN3-262ENST00000637699 ANXA2P07355 339 aaKnown RBP15.85■□□□□ 0.13
CLN3-262ENST00000637699 MSX2P35548 267 aaPredicted RBP15.85■□□□□ 0.13
CLN3-262ENST00000637699 IFNGR2P38484 337 aa15.85■□□□□ 0.13
CLN3-262ENST00000637699 GSSP48637 474 aa15.85■□□□□ 0.13
CLN3-262ENST00000637699 UBE2E1P51965 193 aa15.85■□□□□ 0.13
CLN3-262ENST00000637699 EFNB2P52799 333 aa15.85■□□□□ 0.13
CLN3-262ENST00000637699 TIGD6Q17RP2 521 aa15.85■□□□□ 0.13
CLN3-262ENST00000637699 STUMQ69YW2 141 aa15.85■□□□□ 0.13
CLN3-262ENST00000637699 OR9Q1Q8NGQ5 310 aa15.85■□□□□ 0.13
CLN3-262ENST00000637699 C8orf46Q8TAG6 207 aa15.85■□□□□ 0.13
CLN3-262ENST00000637699 GNPDA2Q8TDQ7 276 aa15.85■□□□□ 0.13
CLN3-262ENST00000637699 SGK3Q96BR1 496 aa15.85■□□□□ 0.13
CLN3-262ENST00000637699 C12orf43Q96C57 262 aaKnown RBP15.85■□□□□ 0.13
CLN3-262ENST00000637699 REEP6Q96HR9 211 aa15.85■□□□□ 0.13
CLN3-262ENST00000637699 SSX3Q99909 188 aa15.85■□□□□ 0.13
CLN3-262ENST00000637699 TOR3AQ9H497 397 aa15.85■□□□□ 0.13
CLN3-262ENST00000637699 HAO2Q9NYQ3 351 aa15.85■□□□□ 0.13
CLN3-262ENST00000637699 ZNF391Q9UJN7 358 aa15.85■□□□□ 0.13
CLN3-262ENST00000637699 ZNF593O00488 134 aaPredicted RBP15.84■□□□□ 0.13
CLN3-262ENST00000637699 GMNNO75496 209 aa15.84■□□□□ 0.13
CLN3-262ENST00000637699 TIPRLO75663 272 aa15.84■□□□□ 0.13
CLN3-262ENST00000637699 KIR2DS4P43632 304 aa15.84■□□□□ 0.13
CLN3-262ENST00000637699 CX3CR1P49238 355 aa15.84■□□□□ 0.13
CLN3-262ENST00000637699 ENTPD1P49961 510 aa15.84■□□□□ 0.13
CLN3-262ENST00000637699 ACSM1Q08AH1 577 aa15.84■□□□□ 0.13
CLN3-262ENST00000637699 TSPAN31Q12999 210 aa15.84■□□□□ 0.13
CLN3-262ENST00000637699 ATPAF1Q5TC12 328 aaPredicted RBP15.84■□□□□ 0.13
CLN3-262ENST00000637699 REC114Q7Z4M0 266 aa15.84■□□□□ 0.13
CLN3-262ENST00000637699 KLHDC1Q8N7A1 406 aa15.84■□□□□ 0.13
CLN3-262ENST00000637699 ZNF511Q8NB15 262 aa15.84■□□□□ 0.13
CLN3-262ENST00000637699 BEND2Q8NDZ0 799 aa15.84■□□□□ 0.13
CLN3-262ENST00000637699 C17orf50Q8WW18 174 aa15.84■□□□□ 0.13
CLN3-262ENST00000637699 RORBQ92753 470 aa15.84■□□□□ 0.13
CLN3-262ENST00000637699 PYURFQ96I23 114 aa15.84■□□□□ 0.13
CLN3-262ENST00000637699 WDR13Q9H1Z4 485 aa15.84■□□□□ 0.13
CLN3-262ENST00000637699 GORASP2Q9H8Y8 452 aa15.84■□□□□ 0.13
CLN3-262ENST00000637699 CD300AQ9UGN4 299 aa15.84■□□□□ 0.13
CLN3-262ENST00000637699 TAGLN3Q9UI15 199 aa15.84■□□□□ 0.13
CLN3-262ENST00000637699 A0A1W2PQ09 198 aa15.83■□□□□ 0.12
CLN3-262ENST00000637699 ZNF878C9JN71 531 aa15.83■□□□□ 0.12
CLN3-262ENST00000637699 HSD17B1P14061 328 aa15.83■□□□□ 0.12
CLN3-262ENST00000637699 POU1F1P28069 291 aa15.83■□□□□ 0.12
CLN3-262ENST00000637699 FMO3P31513 532 aa15.83■□□□□ 0.12
CLN3-262ENST00000637699 GNALP38405 381 aa15.83■□□□□ 0.12
CLN3-262ENST00000637699 GFOD2Q3B7J2 385 aa15.83■□□□□ 0.12
CLN3-262ENST00000637699 NCR3LG1Q68D85 454 aa15.83■□□□□ 0.12
CLN3-262ENST00000637699 PGBD2Q6P3X8 592 aa15.83■□□□□ 0.12
CLN3-262ENST00000637699 PGAM4Q8N0Y7 254 aa15.83■□□□□ 0.12
CLN3-262ENST00000637699 LYG1Q8N1E2 194 aa15.83■□□□□ 0.12
CLN3-262ENST00000637699 SLC37A3Q8NCC5 494 aa15.83■□□□□ 0.12
CLN3-262ENST00000637699 OR52L1Q8NGH7 329 aa15.83■□□□□ 0.12
CLN3-262ENST00000637699 OR4C13Q8NGP0 309 aa15.83■□□□□ 0.12
CLN3-262ENST00000637699 MRAPQ8TCY5 172 aa15.83■□□□□ 0.12
CLN3-262ENST00000637699 CFHR4Q92496 578 aa15.83■□□□□ 0.12
CLN3-262ENST00000637699 ITPKCQ96DU7 683 aa15.83■□□□□ 0.12
CLN3-262ENST00000637699 CDRT15Q96T59 188 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms