RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SETD6Q8TBK2 473 aa14.58□□□□□ -0.07
CLN3-252ENST00000636907 POFUT1Q9H488 388 aa14.58□□□□□ -0.07
CLN3-252ENST00000636907 RABL2AQ9UBK7 228 aaPredicted RBP14.58□□□□□ -0.07
CLN3-252ENST00000636907 RABL2BQ9UNT1 228 aa14.58□□□□□ -0.07
CLN3-252ENST00000636907 STARD10Q9Y365 291 aa14.58□□□□□ -0.07
CLN3-252ENST00000636907 MED19A0JLT2 244 aaPredicted RBP14.58□□□□□ -0.08
CLN3-252ENST00000636907 EEF1E1O43324 174 aaKnown RBP14.58□□□□□ -0.08
CLN3-252ENST00000636907 LANCL1O43813 399 aa14.58□□□□□ -0.08
CLN3-252ENST00000636907 PTTG1O95997 202 aa14.58□□□□□ -0.08
CLN3-252ENST00000636907 OR3A4PP47883 348 aa14.58□□□□□ -0.08
CLN3-252ENST00000636907 PTH2RP49190 550 aa14.58□□□□□ -0.08
CLN3-252ENST00000636907 KLRB1Q12918 225 aa14.58□□□□□ -0.08
CLN3-252ENST00000636907 MALLQ13021 153 aa14.58□□□□□ -0.08
CLN3-252ENST00000636907 RNASE12Q5GAN4 147 aaKnown RBP14.58□□□□□ -0.08
CLN3-252ENST00000636907 AWAT2Q6E213 333 aa14.58□□□□□ -0.08
CLN3-252ENST00000636907 BHLHA15Q7RTS1 189 aaPredicted RBP14.58□□□□□ -0.08
CLN3-252ENST00000636907 ANGPTL5Q86XS5 388 aa14.58□□□□□ -0.08
CLN3-252ENST00000636907 C19orf18Q8NEA5 215 aa14.58□□□□□ -0.08
CLN3-252ENST00000636907 PIGTQ969N2 578 aa14.58□□□□□ -0.08
CLN3-252ENST00000636907 TRIM63Q969Q1 353 aa14.58□□□□□ -0.08
CLN3-252ENST00000636907 RFT1Q96AA3 541 aa14.58□□□□□ -0.08
CLN3-252ENST00000636907 COX4I2Q96KJ9 171 aa14.58□□□□□ -0.08
CLN3-252ENST00000636907 THAP7Q9BT49 309 aaPredicted RBP14.58□□□□□ -0.08
CLN3-252ENST00000636907 REPIN1Q9BWE0 567 aaKnown RBP14.58□□□□□ -0.08
CLN3-252ENST00000636907 PRORYQ9H606 182 aa14.58□□□□□ -0.08
CLN3-252ENST00000636907 PTTG3PQ9NZH4 202 aa14.58□□□□□ -0.08
CLN3-252ENST00000636907 CTDSPLO15194 276 aa14.57□□□□□ -0.08
CLN3-252ENST00000636907 GMDSO60547 372 aa14.57□□□□□ -0.08
CLN3-252ENST00000636907 AGFG2O95081 481 aa14.57□□□□□ -0.08
CLN3-252ENST00000636907 BPNT1O95861 308 aa14.57□□□□□ -0.08
CLN3-252ENST00000636907 CBR1P16152 277 aa14.57□□□□□ -0.08
CLN3-252ENST00000636907 MMP15P51511 669 aa14.57□□□□□ -0.08
CLN3-252ENST00000636907 CAPZA1P52907 286 aa14.57□□□□□ -0.08
CLN3-252ENST00000636907 TAS2R20P59543 309 aa14.57□□□□□ -0.08
CLN3-252ENST00000636907 DGCR2P98153 550 aa14.57□□□□□ -0.08
CLN3-252ENST00000636907 PMPCAQ10713 525 aa14.57□□□□□ -0.08
CLN3-252ENST00000636907 ASAH1Q13510 395 aa14.57□□□□□ -0.08
CLN3-252ENST00000636907 HLXQ14774 488 aaPredicted RBP14.57□□□□□ -0.08
CLN3-252ENST00000636907 KISS1Q15726 138 aa14.57□□□□□ -0.08
CLN3-252ENST00000636907 CLVS2Q5SYC1 327 aa14.57□□□□□ -0.08
CLN3-252ENST00000636907 TMEM42Q69YG0 159 aa14.57□□□□□ -0.08
CLN3-252ENST00000636907 GDPD3Q7L5L3 318 aa14.57□□□□□ -0.08
CLN3-252ENST00000636907 C17orf78Q8N4C9 275 aa14.57□□□□□ -0.08
CLN3-252ENST00000636907 GPER1Q99527 375 aa14.57□□□□□ -0.08
CLN3-252ENST00000636907 SH3BGRL2Q9UJC5 107 aa14.57□□□□□ -0.08
CLN3-252ENST00000636907 MRPS28Q9Y2Q9 187 aaKnown RBP14.57□□□□□ -0.08
CLN3-252ENST00000636907 PLA2G10O15496 165 aa14.56□□□□□ -0.08
CLN3-252ENST00000636907 XRCC3O43542 346 aa14.56□□□□□ -0.08
CLN3-252ENST00000636907 SSX4O60224 188 aa14.56□□□□□ -0.08
CLN3-252ENST00000636907 KDM4BO94953 1096 aa14.56□□□□□ -0.08
CLN3-252ENST00000636907 VSIG8P0DPA2 414 aa14.56□□□□□ -0.08
CLN3-252ENST00000636907 SPNP16150 400 aa14.56□□□□□ -0.08
CLN3-252ENST00000636907 MNDAP41218 407 aa14.56□□□□□ -0.08
CLN3-252ENST00000636907 QRFPP83859 136 aa14.56□□□□□ -0.08
CLN3-252ENST00000636907 UNC119Q13432 240 aa14.56□□□□□ -0.08
CLN3-252ENST00000636907 GLIPR1L1Q6UWM5 242 aa14.56□□□□□ -0.08
CLN3-252ENST00000636907 RFPL4BQ6ZWI9 263 aa14.56□□□□□ -0.08
CLN3-252ENST00000636907 MRPL21Q7Z2W9 205 aaKnown RBP14.56□□□□□ -0.08
CLN3-252ENST00000636907 PIAS4Q8N2W9 510 aaPredicted RBP14.56□□□□□ -0.08
CLN3-252ENST00000636907 UBASH3BQ8TF42 649 aa14.56□□□□□ -0.08
CLN3-252ENST00000636907 GCDHQ92947 438 aaPredicted RBP14.56□□□□□ -0.08
CLN3-252ENST00000636907 YIPF5Q969M3 257 aa14.56□□□□□ -0.08
CLN3-252ENST00000636907 PTX4Q96A99 478 aa14.56□□□□□ -0.08
CLN3-252ENST00000636907 C1QTNF6Q9BXI9 259 aa14.56□□□□□ -0.08
CLN3-252ENST00000636907 ATG5Q9H1Y0 275 aa14.56□□□□□ -0.08
CLN3-252ENST00000636907 OR51B6Q9H340 312 aa14.56□□□□□ -0.08
CLN3-252ENST00000636907 TBCCD1Q9NVR7 557 aa14.56□□□□□ -0.08
CLN3-252ENST00000636907 CHD8Q9HCK8 2581 aa14.56□□□□□ -0.08
CLN3-252ENST00000636907 TLN1Q9Y490 2541 aaKnown RBP14.56□□□□□ -0.08
CLN3-252ENST00000636907 A0A0G2JNJ9 132 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 ZNF816-ZNF321PA0A0X1KG74 233 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 GGT3PA6NGU5 568 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 NRASP01111 189 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 IGKV3-15P01624 115 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 CD3GP09693 182 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 PTHLHP12272 177 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 RAB6AP20340 208 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 CNN3Q15417 329 aaKnown RBP14.55□□□□□ -0.08
CLN3-252ENST00000636907 ZBTB37Q5TC79 503 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 MTFR2Q6P444 385 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 NCCRP1Q6ZVX7 275 aaPredicted RBP14.55□□□□□ -0.08
CLN3-252ENST00000636907 OR56B2PQ8NGI1 322 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 SMIM4Q8WVI0 70 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 C1orf147Q96MC9 270 aaPredicted RBP14.55□□□□□ -0.08
CLN3-252ENST00000636907 GAL3ST1Q99999 423 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 C11orf54Q9H0W9 315 aaPredicted RBP14.55□□□□□ -0.08
CLN3-252ENST00000636907 AUNIPQ9H7T9 357 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 CDH20Q9HBT6 801 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 DIABLOQ9NR28 239 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 Q9UFV3 132 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 OR5H1A6NKK0 313 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 GSTZ1O43708 216 aaPredicted RBP14.55□□□□□ -0.08
CLN3-252ENST00000636907 OPRM1P35372 400 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 RFX2P48378 723 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 INPP1P49441 399 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 RBPJQ06330 500 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 ZNF57Q68EA5 555 aaPredicted RBP14.55□□□□□ -0.08
CLN3-252ENST00000636907 NRARPQ7Z6K4 114 aa14.55□□□□□ -0.08
CLN3-252ENST00000636907 PNLDC1Q8NA58 520 aaKnown RBP14.55□□□□□ -0.08
CLN3-252ENST00000636907 OR5D18Q8NGL1 313 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms