RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SLC25A38Q96DW6 304 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 WBP1Q96G27 269 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 WDR12Q9GZL7 423 aaKnown RBP17.31■□□□□ 0.36
CLN3-250ENST00000636839 OBP2BQ9NPH6 170 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 SPATA2Q9UM82 520 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 ZFYVE26Q68DK2 2539 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 MEGF11A6BM72 1044 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 C16orf97H3BN30 126 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 M0R1B8 84 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 HCKP08631 526 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 EFNB2P52799 333 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 UCP2P55851 309 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 C2orf76Q3KRA6 126 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 OR10K2Q6IF99 312 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 SEZ6L2Q6UXD5 910 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 OR4M1Q8NGD0 313 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 PIGCQ92535 297 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 ZC3HAV1LQ96H79 300 aaKnown RBP17.31■□□□□ 0.36
CLN3-250ENST00000636839 OR2J1Q9GZK6 312 aa17.31■□□□□ 0.36
CLN3-250ENST00000636839 EPG5Q9HCE0 2579 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 FABP12A6NFH5 140 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 HTR2CP28335 458 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 TMEM255AQ5JRV8 349 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 FAM131AQ6UXB0 335 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 BIVMQ86UB2 503 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 CMTM4Q8IZR5 234 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 OR5D18Q8NGL1 313 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 PRR7Q8TB68 274 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 PP6455Q8WZ26 134 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 DVL3Q92997 716 aaPredicted RBP17.3■□□□□ 0.36
CLN3-250ENST00000636839 FAM3DQ96BQ1 224 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 ELOVL5Q9NYP7 299 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 EIF3KQ9UBQ5 218 aaKnown RBP17.3■□□□□ 0.36
CLN3-250ENST00000636839 ZNF391Q9UJN7 358 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 CADP27708 2225 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 IGHV2OR16-5A0A0B4J2B6 119 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 ZNF93P35789 620 aaPredicted RBP17.3■□□□□ 0.36
CLN3-250ENST00000636839 POU3F4P49335 361 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 PPP1CBP62140 327 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 DCTN2Q13561 401 aaKnown RBP17.3■□□□□ 0.36
CLN3-250ENST00000636839 OR2T2Q6IF00 324 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 METAP1DQ6UB28 335 aaPredicted RBP17.3■□□□□ 0.36
CLN3-250ENST00000636839 IZUMO1Q8IYV9 350 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 STEAP2Q8NFT2 490 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 SSC4DQ8WTU2 575 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 MUCL1Q96DR8 90 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 CYSLTR2Q9NS75 346 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 EXTL2Q9UBQ6 330 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 GPR160Q9UJ42 338 aa17.3■□□□□ 0.36
CLN3-250ENST00000636839 NKX2-6A6NCS4 301 aa17.29■□□□□ 0.36
CLN3-250ENST00000636839 GGT3PA6NGU5 568 aa17.29■□□□□ 0.36
CLN3-250ENST00000636839 FAM90A27PA6NNH2 459 aa17.29■□□□□ 0.36
CLN3-250ENST00000636839 ZNF850A8MQ14 1090 aa17.29■□□□□ 0.36
CLN3-250ENST00000636839 NRASP01111 189 aa17.29■□□□□ 0.36
CLN3-250ENST00000636839 OR3A4PP47883 348 aa17.29■□□□□ 0.36
CLN3-250ENST00000636839 ZNF45Q02386 682 aa17.29■□□□□ 0.36
CLN3-250ENST00000636839 ALKBH6Q3KRA9 238 aa17.29■□□□□ 0.36
CLN3-250ENST00000636839 C1orf100Q5SVJ3 147 aa17.29■□□□□ 0.36
CLN3-250ENST00000636839 TMEM42Q69YG0 159 aa17.29■□□□□ 0.36
CLN3-250ENST00000636839 UTS2BQ765I0 119 aa17.29■□□□□ 0.36
CLN3-250ENST00000636839 NKAIN3Q8N8D7 197 aa17.29■□□□□ 0.36
CLN3-250ENST00000636839 OR1J1Q8NGS3 322 aa17.29■□□□□ 0.36
CLN3-250ENST00000636839 SLC25A40Q8TBP6 338 aa17.29■□□□□ 0.36
CLN3-250ENST00000636839 BBC3Q96PG8 261 aaPredicted RBP17.29■□□□□ 0.36
CLN3-250ENST00000636839 GAL3ST1Q99999 423 aa17.29■□□□□ 0.36
CLN3-250ENST00000636839 SOSTQ9BQB4 213 aa17.29■□□□□ 0.36
CLN3-250ENST00000636839 IGKV1-27A0A075B6S5 117 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 DHRS7CA6NNS2 312 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 PRB1P04280 392 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 OCMP0CE72 109 aaPredicted RBP17.28■□□□□ 0.36
CLN3-250ENST00000636839 PPP5CP53041 499 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 ESPL1Q14674 2120 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 UBASH3BQ8TF42 649 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 BORCS5Q969J3 196 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 CMBLQ96DG6 245 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 METTL17Q9H7H0 456 aaPredicted RBP17.28■□□□□ 0.36
CLN3-250ENST00000636839 FZR1Q9UM11 496 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 DIDO1Q9BTC0 2240 aaKnown RBP17.28■□□□□ 0.36
CLN3-250ENST00000636839 FAM230AA0A1W2PPH8 454 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 CD300LBA8K4G0 201 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 THBDP07204 575 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 CALCBP10092 127 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 GNLYP22749 145 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 CFPP27918 469 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 GRNP28799 593 aaKnown RBP17.28■□□□□ 0.36
CLN3-250ENST00000636839 NAAAQ02083 359 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 KISS1Q15726 138 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 CLVS2Q5SYC1 327 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 MOB3CQ70IA8 216 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 C1QL2Q7Z5L3 287 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 LRRC28Q86X40 367 aaPredicted RBP17.28■□□□□ 0.36
CLN3-250ENST00000636839 ANGPTL5Q86XS5 388 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 CCDC54Q8NEL0 328 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 OR6M1Q8NGM8 313 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 SYNPRQ8TBG9 265 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 C10orf35Q96D05 121 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 FGF23Q9GZV9 251 aaPredicted RBP17.28■□□□□ 0.36
CLN3-250ENST00000636839 C14orf119Q9NWQ9 140 aa17.28■□□□□ 0.36
CLN3-250ENST00000636839 HEATR1Q9H583 2144 aaKnown RBP17.27■□□□□ 0.36
CLN3-250ENST00000636839 A0A0G2JMP0 313 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms