RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 SELLP14151 372 aa13.29□□□□□ -0.28
CLN3-246ENST00000636228 AMY2BP19961 511 aa13.29□□□□□ -0.28
CLN3-246ENST00000636228 ATP6V1B2P21281 511 aa13.29□□□□□ -0.28
CLN3-246ENST00000636228 HSD11B1P28845 292 aa13.29□□□□□ -0.28
CLN3-246ENST00000636228 DDOSTP39656 456 aa13.29□□□□□ -0.28
CLN3-246ENST00000636228 KLHL12Q53G59 568 aa13.29□□□□□ -0.28
CLN3-246ENST00000636228 TEX30Q5JUR7 227 aa13.29□□□□□ -0.28
CLN3-246ENST00000636228 LDLRAD3Q86YD5 345 aa13.29□□□□□ -0.28
CLN3-246ENST00000636228 DEFB107AQ8IZN7 70 aa13.29□□□□□ -0.28
CLN3-246ENST00000636228 PNKDQ8N490 385 aa13.29□□□□□ -0.28
CLN3-246ENST00000636228 LY6G5BQ8NDX9 201 aa13.29□□□□□ -0.28
CLN3-246ENST00000636228 AMELYQ99218 206 aa13.29□□□□□ -0.28
CLN3-246ENST00000636228 OPA3Q9H6K4 179 aa13.29□□□□□ -0.28
CLN3-246ENST00000636228 RNPEPL1Q9HAU8 725 aa13.29□□□□□ -0.28
CLN3-246ENST00000636228 SNTG1Q9NSN8 517 aa13.29□□□□□ -0.28
CLN3-246ENST00000636228 FAM96BQ9Y3D0 163 aa13.29□□□□□ -0.28
CLN3-246ENST00000636228 RHBDD3Q9Y3P4 386 aa13.29□□□□□ -0.28
CLN3-246ENST00000636228 U3KQV3 271 aa13.29□□□□□ -0.28
CLN3-246ENST00000636228 FAM183AA6NL82 134 aa13.28□□□□□ -0.28
CLN3-246ENST00000636228 GRK5P34947 590 aa13.28□□□□□ -0.28
CLN3-246ENST00000636228 GSK3AP49840 483 aa13.28□□□□□ -0.28
CLN3-246ENST00000636228 SLC25A1P53007 311 aa13.28□□□□□ -0.28
CLN3-246ENST00000636228 PROK1P58294 105 aa13.28□□□□□ -0.28
CLN3-246ENST00000636228 ZNF121P58317 390 aaPredicted RBP13.28□□□□□ -0.28
CLN3-246ENST00000636228 GRB2P62993 217 aaKnown RBP13.28□□□□□ -0.28
CLN3-246ENST00000636228 KLRD1Q13241 179 aa13.28□□□□□ -0.28
CLN3-246ENST00000636228 TAF9Q16594 264 aa13.28□□□□□ -0.28
CLN3-246ENST00000636228 LINC01590Q5TEZ4 76 aa13.28□□□□□ -0.28
CLN3-246ENST00000636228 Q6ZSV7 163 aa13.28□□□□□ -0.28
CLN3-246ENST00000636228 PRSS45Q7RTY3 260 aa13.28□□□□□ -0.28
CLN3-246ENST00000636228 ERI1Q8IV48 349 aaKnown RBP13.28□□□□□ -0.28
CLN3-246ENST00000636228 OR6N2Q8NGY6 317 aa13.28□□□□□ -0.28
CLN3-246ENST00000636228 OTULINQ96BN8 352 aa13.28□□□□□ -0.28
CLN3-246ENST00000636228 ABHD6Q9BV23 337 aa13.28□□□□□ -0.28
CLN3-246ENST00000636228 PAPOLGQ9BWT3 736 aaKnown RBP13.28□□□□□ -0.28
CLN3-246ENST00000636228 TAGLN3Q9UI15 199 aa13.28□□□□□ -0.28
CLN3-246ENST00000636228 KPTNQ9Y664 436 aa13.28□□□□□ -0.28
CLN3-246ENST00000636228 VWFP04275 2813 aa13.28□□□□□ -0.28
CLN3-246ENST00000636228 hCG_38984A0A1B0GV85 526 aa13.27□□□□□ -0.29
CLN3-246ENST00000636228 TIMM23O14925 209 aa13.27□□□□□ -0.29
CLN3-246ENST00000636228 NDUFB3O43676 98 aa13.27□□□□□ -0.29
CLN3-246ENST00000636228 MUC1P15941 1255 aaPredicted RBP13.27□□□□□ -0.29
CLN3-246ENST00000636228 SLC15A1P46059 708 aa13.27□□□□□ -0.29
CLN3-246ENST00000636228 MXRA7P84157 204 aa13.27□□□□□ -0.29
CLN3-246ENST00000636228 OCLNQ16625 522 aa13.27□□□□□ -0.29
CLN3-246ENST00000636228 CPLX4Q7Z7G2 160 aa13.27□□□□□ -0.29
CLN3-246ENST00000636228 C1QL4Q86Z23 238 aa13.27□□□□□ -0.29
CLN3-246ENST00000636228 LINC00471Q8N535 108 aa13.27□□□□□ -0.29
CLN3-246ENST00000636228 IQCF1Q8N6M8 205 aa13.27□□□□□ -0.29
CLN3-246ENST00000636228 Q8N7P7 452 aa13.27□□□□□ -0.29
CLN3-246ENST00000636228 ZSCAN4Q8NAM6 433 aaPredicted RBP13.27□□□□□ -0.29
CLN3-246ENST00000636228 OR2T33Q8NG76 320 aa13.27□□□□□ -0.29
CLN3-246ENST00000636228 H1FXQ92522 213 aaKnown RBP13.27□□□□□ -0.29
CLN3-246ENST00000636228 RPL3LQ92901 407 aaKnown RBP13.27□□□□□ -0.29
CLN3-246ENST00000636228 WDR13Q9H1Z4 485 aa13.27□□□□□ -0.29
CLN3-246ENST00000636228 MMP27Q9H306 513 aa13.27□□□□□ -0.29
CLN3-246ENST00000636228 TCF7L1Q9HCS4 588 aa13.27□□□□□ -0.29
CLN3-246ENST00000636228 TGP01266 2768 aa13.26□□□□□ -0.29
CLN3-246ENST00000636228 A0A1B0GVI7 797 aa13.26□□□□□ -0.29
CLN3-246ENST00000636228 RNASEK-C17orf49H0YIS7 233 aa13.26□□□□□ -0.29
CLN3-246ENST00000636228 CLPXO76031 633 aa13.26□□□□□ -0.29
CLN3-246ENST00000636228 TSPAN15O95858 294 aa13.26□□□□□ -0.29
CLN3-246ENST00000636228 GSTT1P30711 240 aa13.26□□□□□ -0.29
CLN3-246ENST00000636228 GNALP38405 381 aa13.26□□□□□ -0.29
CLN3-246ENST00000636228 NAA10P41227 235 aaPredicted RBP13.26□□□□□ -0.29
CLN3-246ENST00000636228 RPL15P61313 204 aaKnown RBP13.26□□□□□ -0.29
CLN3-246ENST00000636228 MICAQ29983 383 aa13.26□□□□□ -0.29
CLN3-246ENST00000636228 C16orf89Q6UX73 402 aa13.26□□□□□ -0.29
CLN3-246ENST00000636228 SLC36A1Q7Z2H8 476 aa13.26□□□□□ -0.29
CLN3-246ENST00000636228 FAM110DQ8TAY7 271 aaPredicted RBP13.26□□□□□ -0.29
CLN3-246ENST00000636228 RNF133Q8WVZ7 376 aa13.26□□□□□ -0.29
CLN3-246ENST00000636228 UBE2FQ969M7 185 aa13.26□□□□□ -0.29
CLN3-246ENST00000636228 PGAM5Q96HS1 289 aa13.26□□□□□ -0.29
CLN3-246ENST00000636228 INTS14Q96SY0 518 aa13.26□□□□□ -0.29
CLN3-246ENST00000636228 PKP2Q99959 881 aa13.26□□□□□ -0.29
CLN3-246ENST00000636228 DPAGT1Q9H3H5 408 aa13.26□□□□□ -0.29
CLN3-246ENST00000636228 TOR3AQ9H497 397 aa13.26□□□□□ -0.29
CLN3-246ENST00000636228 TAS2R1Q9NYW7 299 aa13.26□□□□□ -0.29
CLN3-246ENST00000636228 PRPF19Q9UMS4 504 aaKnown RBP13.26□□□□□ -0.29
CLN3-246ENST00000636228 TCRBV5S2A0A599 114 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 RIIAD1A6NNX1 92 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 ZNF850A8MQ14 1090 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 NPFFO15130 113 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 AKR7A2O43488 359 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 IFNGP01579 166 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 MAGEA2P43356 314 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 TGM4P49221 684 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 PRDX4Q13162 271 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 C11orf91Q3C1V1 193 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 STUMQ69YW2 141 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 HIST2H2BDQ6DRA6 164 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 GDPGP1Q6ZNW5 385 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 KCTD8Q6ZWB6 473 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 ITPKCQ96DU7 683 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 NIPSNAP1Q9BPW8 284 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 MICU1Q9BPX6 476 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 DCTN5Q9BTE1 182 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 FGF23Q9GZV9 251 aaPredicted RBP13.25□□□□□ -0.29
CLN3-246ENST00000636228 TLNRD1Q9H1K6 362 aa13.25□□□□□ -0.29
CLN3-246ENST00000636228 OR10A2Q9H208 303 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms