RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 OR51L1Q8NGJ5 315 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 OR8S1Q8NH09 359 aa15.26■□□□□ 0.03
CLN3-241ENST00000635861 hCG_1807616A0A1W2PRN6 198 aa15.25■□□□□ 0.03
CLN3-241ENST00000635861 GPR37O15354 613 aa15.25■□□□□ 0.03
CLN3-241ENST00000635861 SFTPBP07988 381 aa15.25■□□□□ 0.03
CLN3-241ENST00000635861 PSKH1P11801 424 aa15.25■□□□□ 0.03
CLN3-241ENST00000635861 ZNF3P17036 446 aa15.25■□□□□ 0.03
CLN3-241ENST00000635861 HSD11B1P28845 292 aa15.25■□□□□ 0.03
CLN3-241ENST00000635861 CX3CR1P49238 355 aa15.25■□□□□ 0.03
CLN3-241ENST00000635861 TIGD6Q17RP2 521 aa15.25■□□□□ 0.03
CLN3-241ENST00000635861 MICBQ29980 383 aa15.25■□□□□ 0.03
CLN3-241ENST00000635861 MICAQ29983 383 aa15.25■□□□□ 0.03
CLN3-241ENST00000635861 FIP1L1Q6UN15 594 aaKnown RBP15.25■□□□□ 0.03
CLN3-241ENST00000635861 LYPD4Q6UWN0 246 aa15.25■□□□□ 0.03
CLN3-241ENST00000635861 C17orf107Q6ZR85 190 aa15.25■□□□□ 0.03
CLN3-241ENST00000635861 SLC16A9Q7RTY1 509 aa15.25■□□□□ 0.03
CLN3-241ENST00000635861 FTMTQ8N4E7 242 aa15.25■□□□□ 0.03
CLN3-241ENST00000635861 ZNF511Q8NB15 262 aa15.25■□□□□ 0.03
CLN3-241ENST00000635861 WFDC12Q8WWY7 111 aa15.25■□□□□ 0.03
CLN3-241ENST00000635861 DYRK2Q92630 601 aa15.25■□□□□ 0.03
CLN3-241ENST00000635861 C12orf43Q96C57 262 aaKnown RBP15.25■□□□□ 0.03
CLN3-241ENST00000635861 TSC22D3Q99576 134 aa15.25■□□□□ 0.03
CLN3-241ENST00000635861 SMURF1Q9HCE7 757 aa15.25■□□□□ 0.03
CLN3-241ENST00000635861 KPTNQ9Y664 436 aa15.25■□□□□ 0.03
CLN3-241ENST00000635861 IGHV1-69DA0A0B4J2H0 117 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 DHRS12A0PJE2 317 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 RIIAD1A6NNX1 92 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 DVL1O14640 695 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 IGHV1-69P01742 117 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 GYPAP02724 150 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 SLC2A1P11166 492 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 ANOS1P23352 680 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 FAM3AP98173 230 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 DYNC1I2Q13409 638 aaKnown RBP15.24■□□□□ 0.03
CLN3-241ENST00000635861 FLOT2Q14254 428 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 RUSC1-AS1Q66K80 236 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 OLFML2AQ68BL7 652 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 CD300LDQ6UXZ3 194 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 BTN2A1Q7KYR7 527 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 LDLRAD3Q86YD5 345 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 CSNK2A3Q8NEV1 391 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 OR6K6Q8NGW6 343 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 RNF133Q8WVZ7 376 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 CHIAQ9BZP6 476 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 RGCCQ9H4X1 137 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 REEP1Q9H902 201 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 MARCH7Q9H992 704 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 ABCB9Q9NP78 766 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 CMC2Q9NRP2 79 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 C1RLQ9NZP8 487 aa15.24■□□□□ 0.03
CLN3-241ENST00000635861 A0A1B0GVI7 797 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 TCRBV5S2A0A599 114 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 CLPSL1A2RUU4 121 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 C5orf63A6NC05 138 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 TBX1O43435 398 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 KCNAB3O43448 404 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 GYPBP06028 91 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 ANXA2P07355 339 aaKnown RBP15.23■□□□□ 0.03
CLN3-241ENST00000635861 OMGP23515 440 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 NAA10P41227 235 aaPredicted RBP15.23■□□□□ 0.03
CLN3-241ENST00000635861 EIF2B1Q14232 305 aaKnown RBP15.23■□□□□ 0.03
CLN3-241ENST00000635861 CDONQ4KMG0 1287 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 LINC01590Q5TEZ4 76 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 OR2T5Q6IEZ7 315 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 ZFP1Q6P2D0 407 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 METAP1DQ6UB28 335 aaPredicted RBP15.23■□□□□ 0.03
CLN3-241ENST00000635861 CYP2R1Q6VVX0 501 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 ZNF826PQ6ZT77 177 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 SHFQ7M4L6 423 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 SLC36A1Q7Z2H8 476 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 DPY19L4Q7Z388 723 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 OR1M1Q8NGA1 313 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 OR2T29Q8NH02 315 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 OR4Q3Q8NH05 313 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 NPRL2Q8WTW4 380 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 REEP6Q96HR9 211 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 INTS14Q96SY0 518 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 CNTD2Q9H8S5 307 aa15.23■□□□□ 0.03
CLN3-241ENST00000635861 RPUSD1Q9UJJ7 312 aaKnown RBP15.23■□□□□ 0.03
CLN3-241ENST00000635861 NOTCH1P46531 2555 aa15.22■□□□□ 0.03
CLN3-241ENST00000635861 hCG_38984A0A1B0GV85 526 aa15.22■□□□□ 0.03
CLN3-241ENST00000635861 AQP12BA6NM10 295 aa15.22■□□□□ 0.03
CLN3-241ENST00000635861 HSPA13P48723 471 aa15.22■□□□□ 0.03
CLN3-241ENST00000635861 HOXA4Q00056 320 aaPredicted RBP15.22■□□□□ 0.03
CLN3-241ENST00000635861 FAM98BQ52LJ0 330 aaKnown RBP15.22■□□□□ 0.03
CLN3-241ENST00000635861 PRSS45Q7RTY3 260 aa15.22■□□□□ 0.03
CLN3-241ENST00000635861 AQP12AQ8IXF9 295 aa15.22■□□□□ 0.03
CLN3-241ENST00000635861 LRRC29Q8WV35 223 aa15.22■□□□□ 0.03
CLN3-241ENST00000635861 LHX4Q969G2 390 aa15.22■□□□□ 0.03
CLN3-241ENST00000635861 SGK3Q96BR1 496 aa15.22■□□□□ 0.03
CLN3-241ENST00000635861 DNTTIP1Q9H147 329 aa15.22■□□□□ 0.03
CLN3-241ENST00000635861 TLNRD1Q9H1K6 362 aa15.22■□□□□ 0.03
CLN3-241ENST00000635861 OR10A2Q9H208 303 aa15.22■□□□□ 0.03
CLN3-241ENST00000635861 CAB39Q9Y376 341 aaPredicted RBP15.22■□□□□ 0.03
CLN3-241ENST00000635861 SAMHD1Q9Y3Z3 626 aaKnown RBP15.22■□□□□ 0.03
CLN3-241ENST00000635861 TCRBV3S1A0A5B6 114 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 GNALP38405 381 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 IL5RAQ01344 420 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 WDR82Q6UXN9 313 aa15.21■□□□□ 0.03
CLN3-241ENST00000635861 C11orf53Q8IXP5 236 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms