RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 IFNA2P01563 188 aa15.32■□□□□ 0.04
CLN3-239ENST00000628023 CRYBB2P43320 205 aa15.32■□□□□ 0.04
CLN3-239ENST00000628023 MAP2K3P46734 347 aa15.32■□□□□ 0.04
CLN3-239ENST00000628023 MZT1Q08AG7 82 aa15.32■□□□□ 0.04
CLN3-239ENST00000628023 WDR38Q5JTN6 314 aa15.32■□□□□ 0.04
CLN3-239ENST00000628023 SYS1Q8N2H4 156 aa15.32■□□□□ 0.04
CLN3-239ENST00000628023 STX19Q8N4C7 294 aa15.32■□□□□ 0.04
CLN3-239ENST00000628023 SEMA6DQ8NFY4 1073 aa15.32■□□□□ 0.04
CLN3-239ENST00000628023 GGHQ92820 318 aa15.32■□□□□ 0.04
CLN3-239ENST00000628023 MEGF10Q96KG7 1140 aa15.32■□□□□ 0.04
CLN3-239ENST00000628023 CNBD2Q96M20 576 aa15.32■□□□□ 0.04
CLN3-239ENST00000628023 SOX7Q9BT81 388 aa15.32■□□□□ 0.04
CLN3-239ENST00000628023 BPESC1Q9GZL8 116 aa15.32■□□□□ 0.04
CLN3-239ENST00000628023 ZNF275Q9NSD4 429 aaPredicted RBP15.32■□□□□ 0.04
CLN3-239ENST00000628023 CNOT2Q9NZN8 540 aaKnown RBP15.32■□□□□ 0.04
CLN3-239ENST00000628023 RAB26Q9ULW5 256 aa15.32■□□□□ 0.04
CLN3-239ENST00000628023 EXOSC1Q9Y3B2 195 aaKnown RBP15.32■□□□□ 0.04
CLN3-239ENST00000628023 ATRQ13535 2644 aa15.32■□□□□ 0.04
CLN3-239ENST00000628023 IGHV3-64DA0A0J9YX35 117 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 CLDN25C9JDP6 229 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 GMDSO60547 372 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 UBCP0CG48 685 aaKnown RBP15.31■□□□□ 0.04
CLN3-239ENST00000628023 PIPP12273 146 aaPredicted RBP15.31■□□□□ 0.04
CLN3-239ENST00000628023 ATP6V1B1P15313 513 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 ACKR3P25106 362 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 NR4A2P43354 598 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 GPR6P46095 362 aaPredicted RBP15.31■□□□□ 0.04
CLN3-239ENST00000628023 CSNK2BP67870 215 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 ST3GAL4Q11206 333 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 SPRNQ5BIV9 151 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 C6orf141Q5SZD1 244 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 LAIR2Q6ISS4 152 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 TMPRSS11AQ6ZMR5 421 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 DOK3Q7L591 496 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 KLBQ86Z14 1044 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 KLHL36Q8N4N3 616 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 SPATA3Q8NHX4 192 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 PIGCQ92535 297 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 ZNF184Q99676 751 aaPredicted RBP15.31■□□□□ 0.04
CLN3-239ENST00000628023 JAM3Q9BX67 310 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 Q9H521 79 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 ISG20L2Q9H9L3 353 aaKnown RBP15.31■□□□□ 0.04
CLN3-239ENST00000628023 PLEKHA1Q9HB21 404 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 PLCXD1Q9NUJ7 323 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 SCN3BQ9NY72 215 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 PPP1R3CQ9UQK1 317 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 RHBDD3Q9Y3P4 386 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 CACNG2Q9Y698 323 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 COL6A5A8TX70 2615 aa15.31■□□□□ 0.04
CLN3-239ENST00000628023 ZNF816-ZNF321PA0A0X1KG74 233 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 ANXA2P2A6NMY6 339 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 H3BSH0 61 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 SLC1A7O00341 560 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 SYT7O43581 403 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 RP2O75695 350 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 DHRS3O75911 302 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 LIMS3P0CW19 117 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 LIMS4P0CW20 117 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 GIFP27352 417 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 ETV1P50549 477 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 GBX2P52951 348 aaPredicted RBP15.3■□□□□ 0.04
CLN3-239ENST00000628023 SLC3A1Q07837 685 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 RIPPLY1Q0D2K3 151 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 MRPL28Q13084 256 aaKnown RBP15.3■□□□□ 0.04
CLN3-239ENST00000628023 PRSS35Q8N3Z0 413 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 SPERTQ8NA61 448 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 OR2G2Q8NGZ5 317 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 PELI1Q96FA3 418 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 TIMD4Q96H15 378 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 ABCB9Q9NP78 766 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 PSORS1C1Q9UIG5 152 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 PIGLQ9Y2B2 252 aa15.3■□□□□ 0.04
CLN3-239ENST00000628023 A0A1B0GWJ7 208 aa15.29■□□□□ 0.04
CLN3-239ENST00000628023 ZNF850A8MQ14 1090 aa15.29■□□□□ 0.04
CLN3-239ENST00000628023 A8MV72 311 aaPredicted RBP15.29■□□□□ 0.04
CLN3-239ENST00000628023 IGLV3-1P01715 115 aa15.29■□□□□ 0.04
CLN3-239ENST00000628023 CD200P41217 278 aa15.29■□□□□ 0.04
CLN3-239ENST00000628023 KIR3DL2P43630 455 aa15.29■□□□□ 0.04
CLN3-239ENST00000628023 TMEM33P57088 247 aa15.29■□□□□ 0.04
CLN3-239ENST00000628023 PRDX4Q13162 271 aa15.29■□□□□ 0.04
CLN3-239ENST00000628023 RIN1Q13671 783 aa15.29■□□□□ 0.04
CLN3-239ENST00000628023 PEG10Q86TG7 708 aaKnown RBP15.29■□□□□ 0.04
CLN3-239ENST00000628023 MOGAT3Q86VF5 341 aa15.29■□□□□ 0.04
CLN3-239ENST00000628023 ZDHHC23Q8IYP9 409 aa15.29■□□□□ 0.04
CLN3-239ENST00000628023 HAVCR2Q8TDQ0 301 aa15.29■□□□□ 0.04
CLN3-239ENST00000628023 ITFG2Q969R8 447 aa15.29■□□□□ 0.04
CLN3-239ENST00000628023 HIST1H2AAQ96QV6 131 aa15.29■□□□□ 0.04
CLN3-239ENST00000628023 MICU1Q9BPX6 476 aa15.29■□□□□ 0.04
CLN3-239ENST00000628023 C14orf119Q9NWQ9 140 aa15.29■□□□□ 0.04
CLN3-239ENST00000628023 ENPP5Q9UJA9 477 aa15.29■□□□□ 0.04
CLN3-239ENST00000628023 CAB39Q9Y376 341 aaPredicted RBP15.29■□□□□ 0.04
CLN3-239ENST00000628023 CR1P17927 2039 aa15.29■□□□□ 0.04
CLN3-239ENST00000628023 LOC107986453A0A1B0GWG9 222 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 PTGES3LE9PB15 166 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 MYL12BO14950 172 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 CST4P01036 141 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 FAHP16930 419 aa15.28■□□□□ 0.04
CLN3-239ENST00000628023 USF1P22415 310 aaPredicted RBP15.28■□□□□ 0.04
CLN3-239ENST00000628023 NANOS3P60323 173 aaKnown RBP15.28■□□□□ 0.04
CLN3-239ENST00000628023 ALKBH1Q13686 389 aaKnown RBP15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms