RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 SHHQ15465 462 aa12.5□□□□□ -0.41
LDB3-209ENST00000623056 IAH1Q2TAA2 248 aaPredicted RBP12.5□□□□□ -0.41
LDB3-209ENST00000623056 TANGO2Q6ICL3 276 aa12.5□□□□□ -0.41
LDB3-209ENST00000623056 OOSP2Q86WS3 158 aa12.5□□□□□ -0.41
LDB3-209ENST00000623056 C1QL4Q86Z23 238 aa12.5□□□□□ -0.41
LDB3-209ENST00000623056 METTL27Q8N6F8 245 aaPredicted RBP12.5□□□□□ -0.41
LDB3-209ENST00000623056 ZNF565Q8N9K5 539 aa12.5□□□□□ -0.41
LDB3-209ENST00000623056 AVL9Q8NBF6 648 aa12.5□□□□□ -0.41
LDB3-209ENST00000623056 OR5D14Q8NGL3 314 aa12.5□□□□□ -0.41
LDB3-209ENST00000623056 FAM131CQ96AQ9 280 aa12.5□□□□□ -0.41
LDB3-209ENST00000623056 BMFQ96LC9 184 aa12.5□□□□□ -0.41
LDB3-209ENST00000623056 BANF2Q9H503 90 aa12.5□□□□□ -0.41
LDB3-209ENST00000623056 SRPK3Q9UPE1 567 aa12.5□□□□□ -0.41
LDB3-209ENST00000623056 MRPS28Q9Y2Q9 187 aaKnown RBP12.5□□□□□ -0.41
LDB3-209ENST00000623056 SPTBN5Q9NRC6 3674 aaKnown RBP12.5□□□□□ -0.41
LDB3-209ENST00000623056 DEDDO75618 318 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 KLK3P07288 261 aaPredicted RBP12.49□□□□□ -0.41
LDB3-209ENST00000623056 PCK2Q16822 640 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 PRTGQ2VWP7 1150 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 PYY3Q5JQD4 70 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 NSUN5P2Q63ZY6 315 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 ZNF529Q6P280 563 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 DEGS2Q6QHC5 323 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 PNLDC1Q8NA58 520 aaKnown RBP12.49□□□□□ -0.41
LDB3-209ENST00000623056 AKR7LQ8NHP1 331 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 RHBDD1Q8TEB9 315 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 ARHGAP5-AS1Q96IT6 56 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 PRRX2Q99811 253 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 CDC14BO60729 498 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 NPIPB7O75200 414 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 GP1BBP13224 206 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 HOXA5P20719 270 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 FCARP24071 287 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 PTGER4P35408 488 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 MAS1LP35410 378 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 OR3A2P47893 321 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 SLC37A1P57057 533 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 SLC26A5P58743 744 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 FOXK1P85037 733 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 UBAC2Q8NBM4 344 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 OR56B1Q8NGI3 324 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 CD300LFQ8TDQ1 290 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 SLC25A43Q8WUT9 341 aaPredicted RBP12.49□□□□□ -0.41
LDB3-209ENST00000623056 RNF133Q8WVZ7 376 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 C1orf147Q96MC9 270 aaPredicted RBP12.49□□□□□ -0.41
LDB3-209ENST00000623056 ST6GALNAC5Q9BVH7 336 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 PBOV1Q9GZY1 135 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 B3GALT5Q9Y2C3 310 aa12.49□□□□□ -0.41
LDB3-209ENST00000623056 TMED7-TICAM2A0A0A6YYA0 188 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 A0A1W2PP11 408 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 BLACEA4D250 179 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 FAM221BA6H8Z2 402 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 IFITM10A6NMD0 228 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 KNG1P01042 644 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 DANCRP0C864 163 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 FHITP49789 147 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 ARFRP1Q13795 201 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 KIAA0141Q14154 515 aaPredicted RBP12.48□□□□□ -0.41
LDB3-209ENST00000623056 CLEC9AQ6UXN8 241 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 ERGIC1Q969X5 290 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 OR11A1Q9GZK7 315 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 CHRDQ9H2X0 955 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 EHFQ9NZC4 300 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 LSM5Q9Y4Y9 91 aaKnown RBP12.48□□□□□ -0.41
LDB3-209ENST00000623056 IGKV1D-43A0A0B4J1Z2 117 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 RHPN2P1A8MT19 583 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 A8MVM7 634 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 OR3A4PP47883 348 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 SSTP61278 116 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 RPS23P62266 143 aaKnown RBP12.48□□□□□ -0.41
LDB3-209ENST00000623056 DEFA6Q01524 100 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 CDPF1Q6NVV7 123 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 HEPN1Q6WQI6 88 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 WDFY1Q8IWB7 410 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 MAFIPQ8WZ33 124 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 EMG1Q92979 244 aaKnown RBP12.48□□□□□ -0.41
LDB3-209ENST00000623056 YPEL4Q96NS1 127 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 GNRHR2Q96P88 292 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 TMEM59Q9BXS4 323 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 ARV1Q9H2C2 271 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 IGFLR1Q9H665 355 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 KCNJ16Q9NPI9 418 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 C1orf123Q9NWV4 160 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 LUZP4Q9P127 313 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 HDGFL3Q9Y3E1 203 aa12.48□□□□□ -0.41
LDB3-209ENST00000623056 PCNX3Q9H6A9 2034 aa12.47□□□□□ -0.41
LDB3-209ENST00000623056 LY86O95711 162 aa12.47□□□□□ -0.41
LDB3-209ENST00000623056 ZNF20P17024 532 aa12.47□□□□□ -0.41
LDB3-209ENST00000623056 IL11P20809 199 aa12.47□□□□□ -0.41
LDB3-209ENST00000623056 RBMXP38159 391 aaKnown RBP12.47□□□□□ -0.41
LDB3-209ENST00000623056 CAMLGP49069 296 aa12.47□□□□□ -0.41
LDB3-209ENST00000623056 SNU13P55769 128 aaKnown RBP12.47□□□□□ -0.41
LDB3-209ENST00000623056 HSD17B7P56937 341 aa12.47□□□□□ -0.41
LDB3-209ENST00000623056 CSNK2A1P68400 391 aaPredicted RBP12.47□□□□□ -0.41
LDB3-209ENST00000623056 COL19A1Q14993 1142 aa12.47□□□□□ -0.41
LDB3-209ENST00000623056 C19orf47Q8N9M1 422 aaKnown RBP12.47□□□□□ -0.41
LDB3-209ENST00000623056 CSNK2A3Q8NEV1 391 aa12.47□□□□□ -0.41
LDB3-209ENST00000623056 KCNG3Q8TAE7 436 aa12.47□□□□□ -0.41
LDB3-209ENST00000623056 FNDC9Q8TBE3 224 aa12.47□□□□□ -0.41
LDB3-209ENST00000623056 SLC37A2Q8TED4 501 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms