RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ARR3P36575 388 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 B3GALT5-AS1P59052 145 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 CSNK2A3Q8NEV1 391 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 OR56B2PQ8NGI1 322 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 SPRY4Q9C004 299 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 KCNN3Q9UGI6 736 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 FAM221AA4D161 298 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 NPIPB13A6NJU9 1138 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 NPIPB4C9JG80 1138 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 ZNF708P17019 499 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 RBP2P50120 134 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 CHRFAM7AQ494W8 412 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 OR2T2Q6IF00 324 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 YIPF5Q969M3 257 aa13.78□□□□□ -0.2
CPSF1-213ENST00000620219 DHRS3O75911 302 aa13.77□□□□□ -0.2
CPSF1-213ENST00000620219 GRPP07492 148 aa13.77□□□□□ -0.2
CPSF1-213ENST00000620219 LIN54Q6MZP7 749 aa13.77□□□□□ -0.2
CPSF1-213ENST00000620219 OR4D6Q8NGJ1 314 aa13.77□□□□□ -0.2
CPSF1-213ENST00000620219 METTL9Q9H1A3 318 aa13.77□□□□□ -0.2
CPSF1-213ENST00000620219 G6PC2Q9NQR9 355 aa13.77□□□□□ -0.2
CPSF1-213ENST00000620219 HEATR1Q9H583 2144 aaKnown RBP13.77□□□□□ -0.2
CPSF1-213ENST00000620219 SC5DO75845 299 aa13.77□□□□□ -0.21
CPSF1-213ENST00000620219 HLXQ14774 488 aaPredicted RBP13.77□□□□□ -0.21
CPSF1-213ENST00000620219 KISS1Q15726 138 aa13.77□□□□□ -0.21
CPSF1-213ENST00000620219 FAM189A2Q15884 450 aa13.77□□□□□ -0.21
CPSF1-213ENST00000620219 SNAI3Q3KNW1 292 aa13.77□□□□□ -0.21
CPSF1-213ENST00000620219 PIAS4Q8N2W9 510 aaPredicted RBP13.77□□□□□ -0.21
CPSF1-213ENST00000620219 RAB22AQ9UL26 194 aa13.77□□□□□ -0.21
CPSF1-213ENST00000620219 GTF3C1Q12789 2109 aa13.77□□□□□ -0.21
CPSF1-213ENST00000620219 TMEM272A0A1B0GTI8 110 aa13.77□□□□□ -0.21
CPSF1-213ENST00000620219 FBXW9Q5XUX1 488 aa13.77□□□□□ -0.21
CPSF1-213ENST00000620219 PEG10Q86TG7 708 aaKnown RBP13.77□□□□□ -0.21
CPSF1-213ENST00000620219 PRR18Q8N4B5 295 aa13.77□□□□□ -0.21
CPSF1-213ENST00000620219 HAVCR1Q96D42 359 aa13.77□□□□□ -0.21
CPSF1-213ENST00000620219 SLC25A38Q96DW6 304 aa13.77□□□□□ -0.21
CPSF1-213ENST00000620219 FOXJ3Q9UPW0 622 aa13.77□□□□□ -0.21
CPSF1-213ENST00000620219 CST2P09228 141 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 DUSP1P28562 367 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 GFRA1P56159 465 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 ENDOGQ14249 297 aaKnown RBP13.76□□□□□ -0.21
CPSF1-213ENST00000620219 KCNJ8Q15842 424 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 KCTD9Q7L273 389 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 GFI1Q99684 422 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 ACTR6Q9GZN1 396 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 UFSP2Q9NUQ7 469 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 FAM206AQ9NX38 181 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 SPRR3Q9UBC9 169 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 ZNF716A6NP11 495 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 DKK1O94907 266 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 H3F3AP84243 136 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 RBPJQ06330 500 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 RIN1Q13671 783 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 SLC25A26Q70HW3 274 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 OR51F2Q8NH61 342 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 OR56B4Q8NH76 319 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 ACACBO00763 2458 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 DISC1C4P0D8 188 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 TIMM8AO60220 97 aaPredicted RBP13.76□□□□□ -0.21
CPSF1-213ENST00000620219 GMDSO60547 372 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 AKR1C4P17516 323 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 PRKACBP22694 351 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 SELENOVP59797 346 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 ALKBH6Q3KRA9 238 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 TEX30Q5JUR7 227 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 RAB12Q6IQ22 244 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 BRICD5Q6PL45 260 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 TMEM123Q8N131 208 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 GIMAP1Q8WWP7 306 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 OR14J1Q9UGF5 321 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 NOP16Q9Y3C1 178 aaKnown RBP13.76□□□□□ -0.21
CPSF1-213ENST00000620219 ZNF44P15621 663 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 CAPZA1P52907 286 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 TNK1Q13470 666 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 SLC30A7Q8NEW0 376 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 OR10S1Q8NGN2 331 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 HSPB11Q9Y547 144 aa13.76□□□□□ -0.21
CPSF1-213ENST00000620219 MKXQ8IYA7 352 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 PCDHGA9Q9Y5G4 932 aaKnown RBP13.75□□□□□ -0.21
CPSF1-213ENST00000620219 TRBV5-5A0A0J9YX44 114 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 A0A1W2PP11 408 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 M0R1B8 84 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 HAAOP46952 286 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 UBE2MP61081 183 aaKnown RBP13.75□□□□□ -0.21
CPSF1-213ENST00000620219 FCN2Q15485 313 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 SMIM4Q8WVI0 70 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 NOX3Q9HBY0 568 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 PCDHB16Q9NRJ7 776 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 TAS2R8Q9NYW2 309 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 TP53TG5Q9Y2B4 290 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 GABARAPH6UMI1 98 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 ADAM10O14672 748 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 AKAIN1P0CW23 69 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 ZNF83P51522 516 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 UNQ9370/PRO34162Q6UXP9 181 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 BPIFB2Q8N4F0 458 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 MDS2Q8NDY4 140 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 OR1J1Q8NGS3 322 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 TOMM40LQ969M1 308 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 SEC22CQ9BRL7 303 aa13.75□□□□□ -0.21
CPSF1-213ENST00000620219 MPGP29372 298 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms