RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 ZNF248Q8NDW4 579 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 DMBX1Q8NFW5 382 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 PTPMT1Q8WUK0 201 aaPredicted RBP16.26■□□□□ 0.19
UPF1-210ENST00000600689 LIPHQ8WWY8 451 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 EDARADDQ8WWZ3 215 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 C8orf33Q9H7E9 229 aaPredicted RBP16.26■□□□□ 0.19
UPF1-210ENST00000600689 VSX1Q9NZR4 365 aaPredicted RBP16.26■□□□□ 0.19
UPF1-210ENST00000600689 CACFD1Q9UGQ2 172 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 NPIPA1Q9UND3 350 aa16.26■□□□□ 0.19
UPF1-210ENST00000600689 DMDP11532 3685 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 A0A0A6YYH2 397 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 A6NJ64 397 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 ZNF878C9JN71 531 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 XRCC2O43543 280 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 YIF1AO95070 293 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 TTRP02766 147 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 FSTP19883 344 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 NAAAQ02083 359 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 SP6Q3SY56 376 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 OR10H5Q8NGA6 315 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 TINAGQ9UJW2 476 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 GPR132Q9UNW8 380 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 K7EPK0 472 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 IL33O95760 270 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 SMIM6P0DI80 62 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 CDAP32320 146 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 SLC37A1P57057 533 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 PLCXD2Q0VAA5 305 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 TOMM20Q15388 145 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 PDZD11Q5EBL8 140 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 C5orf46Q6UWT4 87 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 FAM71E2Q8N5Q1 922 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 OR13G1Q8NGZ3 307 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 RCL1Q9Y2P8 373 aaKnown RBP16.25■□□□□ 0.19
UPF1-210ENST00000600689 PUS1Q9Y606 427 aaKnown RBP eCLIP16.25■□□□□ 0.19
UPF1-210ENST00000600689 ACKR3P25106 362 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 RPL12P30050 165 aaKnown RBP16.25■□□□□ 0.19
UPF1-210ENST00000600689 PHF19Q5T6S3 580 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 TGM7Q96PF1 710 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 PBOV1Q9GZY1 135 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 ADAM19Q9H013 955 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 LPAR5Q9H1C0 372 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 ZNF576Q9H609 170 aa16.25■□□□□ 0.19
UPF1-210ENST00000600689 PHF3Q92576 2039 aaKnown RBP16.24■□□□□ 0.19
UPF1-210ENST00000600689 SLC33A1O00400 549 aaPredicted RBP16.24■□□□□ 0.19
UPF1-210ENST00000600689 FCGR3AP08637 254 aa16.24■□□□□ 0.19
UPF1-210ENST00000600689 P2RY4P51582 365 aa16.24■□□□□ 0.19
UPF1-210ENST00000600689 TAS2R31P59538 309 aa16.24■□□□□ 0.19
UPF1-210ENST00000600689 SLAMF6Q96DU3 332 aa16.24■□□□□ 0.19
UPF1-210ENST00000600689 SMIM8Q96KF7 97 aa16.24■□□□□ 0.19
UPF1-210ENST00000600689 RTBDNQ9BSG5 229 aaPredicted RBP16.24■□□□□ 0.19
UPF1-210ENST00000600689 DUSP15Q9H1R2 295 aaPredicted RBP16.24■□□□□ 0.19
UPF1-210ENST00000600689 SLC26A1Q9H2B4 701 aa16.24■□□□□ 0.19
UPF1-210ENST00000600689 RHBDD3Q9Y3P4 386 aa16.24■□□□□ 0.19
UPF1-210ENST00000600689 WDFY3Q8IZQ1 3526 aa16.24■□□□□ 0.19
UPF1-210ENST00000600689 PLPP3O14495 311 aa16.24■□□□□ 0.19
UPF1-210ENST00000600689 NUDT21O43809 227 aaKnown RBP16.24■□□□□ 0.19
UPF1-210ENST00000600689 DIRAS3O95661 229 aa16.24■□□□□ 0.19
UPF1-210ENST00000600689 SNU13P55769 128 aaKnown RBP16.24■□□□□ 0.19
UPF1-210ENST00000600689 TMEM33P57088 247 aa16.24■□□□□ 0.19
UPF1-210ENST00000600689 KIAA0895LQ68EN5 471 aa16.24■□□□□ 0.19
UPF1-210ENST00000600689 NKAIN3Q8N8D7 197 aa16.24■□□□□ 0.19
UPF1-210ENST00000600689 HSD17B11Q8NBQ5 300 aa16.24■□□□□ 0.19
UPF1-210ENST00000600689 ERGIC1Q969X5 290 aa16.24■□□□□ 0.19
UPF1-210ENST00000600689 C2orf50Q96LR7 162 aa16.24■□□□□ 0.19
UPF1-210ENST00000600689 MMP24Q9Y5R2 645 aa16.24■□□□□ 0.19
UPF1-210ENST00000600689 RFNGQ9Y644 331 aa16.24■□□□□ 0.19
UPF1-210ENST00000600689 IGHV3-20A0A0C4DH32 117 aa16.23■□□□□ 0.19
UPF1-210ENST00000600689 TNRC18O15417 2968 aaPredicted RBP16.23■□□□□ 0.19
UPF1-210ENST00000600689 HKR1P10072 659 aa16.23■□□□□ 0.19
UPF1-210ENST00000600689 GFERP55789 205 aa16.23■□□□□ 0.19
UPF1-210ENST00000600689 TMEM50BP56557 158 aa16.23■□□□□ 0.19
UPF1-210ENST00000600689 CDPF1Q6NVV7 123 aa16.23■□□□□ 0.19
UPF1-210ENST00000600689 OR5D14Q8NGL3 314 aa16.23■□□□□ 0.19
UPF1-210ENST00000600689 ST7LQ8TDW4 575 aa16.23■□□□□ 0.19
UPF1-210ENST00000600689 TMEM59Q9BXS4 323 aa16.23■□□□□ 0.19
UPF1-210ENST00000600689 URGCP-MRPS24S4R325 110 aa16.23■□□□□ 0.19
UPF1-210ENST00000600689 HEXAP06865 529 aa16.23■□□□□ 0.19
UPF1-210ENST00000600689 CRABP1P29762 137 aa16.23■□□□□ 0.19
UPF1-210ENST00000600689 HGFACQ04756 655 aa16.23■□□□□ 0.19
UPF1-210ENST00000600689 REEP6Q96HR9 211 aa16.23■□□□□ 0.19
UPF1-210ENST00000600689 ASXL3Q9C0F0 2248 aa16.23■□□□□ 0.19
UPF1-210ENST00000600689 TRBV6-7A0A0A0MS04 114 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 NSA2O95478 260 aaKnown RBP16.22■□□□□ 0.19
UPF1-210ENST00000600689 S100A8P05109 93 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 OR8U8P0C7N1 319 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 GSK3AP49840 483 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 PRSS12P56730 875 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 ZNF561Q8N587 486 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 C15orf54Q8N8G6 183 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 OR51T1Q8NGJ9 327 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 ADAMTS18Q8TE60 1221 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 C11orf40Q8WZ69 217 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 TOMM40LQ969M1 308 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 MESP1Q9BRJ9 268 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 LRRC61Q9BV99 259 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 KIR2DS5A0A0G2JLQ3 304 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 A0A0G2JNG1 304 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 KIR2DS3K7RE56 304 aa16.22■□□□□ 0.19
UPF1-210ENST00000600689 PGCP20142 388 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms