RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 C22orf15Q8WYQ4 148 aa12.74□□□□□ -0.37
TRIM28-203ENST00000593582 CNN2Q99439 309 aaKnown RBP12.74□□□□□ -0.37
TRIM28-203ENST00000593582 MICU1Q9BPX6 476 aa12.74□□□□□ -0.37
TRIM28-203ENST00000593582 ERVK-18Q9QC07 812 aa12.74□□□□□ -0.37
TRIM28-203ENST00000593582 NUP50Q9UKX7 468 aa12.74□□□□□ -0.37
TRIM28-203ENST00000593582 TMEM269A0A1B0GVZ9 245 aa12.73□□□□□ -0.37
TRIM28-203ENST00000593582 ACOD1A6NK06 481 aa12.73□□□□□ -0.37
TRIM28-203ENST00000593582 SLC22A31A6NKX4 558 aa12.73□□□□□ -0.37
TRIM28-203ENST00000593582 TRIM77I1YAP6 450 aa12.73□□□□□ -0.37
TRIM28-203ENST00000593582 PSMD9O00233 223 aa12.73□□□□□ -0.37
TRIM28-203ENST00000593582 LHBP01229 141 aa12.73□□□□□ -0.37
TRIM28-203ENST00000593582 PPIAL4GP0DN37 164 aa12.73□□□□□ -0.37
TRIM28-203ENST00000593582 WDR25Q64LD2 544 aaPredicted RBP12.73□□□□□ -0.37
TRIM28-203ENST00000593582 RBMS3Q6XE24 437 aaKnown RBP12.73□□□□□ -0.37
TRIM28-203ENST00000593582 ZNF841Q6ZN19 808 aa12.73□□□□□ -0.37
TRIM28-203ENST00000593582 MEPCEQ7L2J0 689 aaKnown RBP12.73□□□□□ -0.37
TRIM28-203ENST00000593582 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.73□□□□□ -0.37
TRIM28-203ENST00000593582 OR1M1Q8NGA1 313 aa12.73□□□□□ -0.37
TRIM28-203ENST00000593582 OR8B12Q8NGG6 310 aa12.73□□□□□ -0.37
TRIM28-203ENST00000593582 TMEM163Q8TC26 289 aa12.73□□□□□ -0.37
TRIM28-203ENST00000593582 CENPNQ96H22 339 aaPredicted RBP12.73□□□□□ -0.37
TRIM28-203ENST00000593582 TECTBQ96PL2 329 aa12.73□□□□□ -0.37
TRIM28-203ENST00000593582 NUDT16L1Q9BRJ7 211 aaKnown RBP12.73□□□□□ -0.37
TRIM28-203ENST00000593582 RNPEPL1Q9HAU8 725 aa12.73□□□□□ -0.37
TRIM28-203ENST00000593582 ABCB9Q9NP78 766 aa12.73□□□□□ -0.37
TRIM28-203ENST00000593582 MPC1Q9Y5U8 109 aa12.73□□□□□ -0.37
TRIM28-203ENST00000593582 ANK2Q01484 3957 aa12.73□□□□□ -0.37
TRIM28-203ENST00000593582 KIR2DS1A0A191URI9 304 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 ZNF850A8MQ14 1090 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 M0R129 80 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 ADAM20O43506 726 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 ZNF254O75437 659 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 CST4P01036 141 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 ACKR3P25106 362 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 DCTDP32321 178 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 ROM1Q03395 351 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 ZNF829Q3KNS6 432 aaPredicted RBP12.72□□□□□ -0.37
TRIM28-203ENST00000593582 NXNL2Q5VZ03 156 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 CD276Q5ZPR3 534 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 C12orf73Q69YU5 71 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 BCDIN3DQ7Z5W3 292 aaKnown RBP12.72□□□□□ -0.37
TRIM28-203ENST00000593582 WDR86Q86TI4 376 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 GID4Q8IVV7 300 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 ZNF679Q8IYX0 411 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 GALNT4Q8N4A0 578 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 GCSAMQ8N6F7 178 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 FAM81AQ8TBF8 368 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 LRRC29Q8WV35 223 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 ITPKCQ96DU7 683 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 LYZL4Q96KX0 146 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 IL4I1Q96RQ9 567 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 CIB1Q99828 191 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 RTL8AQ9BWD3 113 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 SEMA6AQ9H2E6 1030 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 PPP1R3EQ9H7J1 279 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 FAM206AQ9NX38 181 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 IKZF2Q9UKS7 526 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 OAZ3Q9UMX2 235 aa12.72□□□□□ -0.37
TRIM28-203ENST00000593582 A0A0U1RQV5 110 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 ENSAO43768 121 aaKnown RBP12.71□□□□□ -0.37
TRIM28-203ENST00000593582 GYPAP02724 150 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 RIDAP52758 137 aaKnown RBP12.71□□□□□ -0.37
TRIM28-203ENST00000593582 ACTR3P61158 418 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 ACTG1P63261 375 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 CSNK2BP67870 215 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 EFNB1P98172 346 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 PRDX4Q13162 271 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 MICBQ29980 383 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 KLF17Q5JT82 389 aaPredicted RBP12.71□□□□□ -0.37
TRIM28-203ENST00000593582 AADACL4Q5VUY2 407 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 TEX36Q5VZQ5 186 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 ZNF322Q6U7Q0 402 aaPredicted RBP12.71□□□□□ -0.37
TRIM28-203ENST00000593582 WDR82Q6UXN9 313 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 CCDC121Q6ZUS5 278 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 ASRGL1Q7L266 308 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 COMMD2Q86X83 199 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 FAM90A1Q86YD7 464 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 C11orf53Q8IXP5 236 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 FAM216AQ8WUB2 273 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 OR5P3Q8WZ94 311 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 PIGCQ92535 297 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 ITFG2Q969R8 447 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 DACT3Q96B18 629 aaPredicted RBP12.71□□□□□ -0.37
TRIM28-203ENST00000593582 HIST1H2AAQ96QV6 131 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 OR8B4Q96RC9 309 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 MNTQ99583 582 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 PKP2Q99959 881 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 OSBPL10Q9BXB5 764 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 TTTY10Q9BZA0 68 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 CTSZQ9UBR2 303 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 COPS3Q9UNS2 423 aa12.71□□□□□ -0.37
TRIM28-203ENST00000593582 FBN3Q75N90 2809 aa12.7□□□□□ -0.38
TRIM28-203ENST00000593582 IGHV3OR15-7A0A075B7D8 119 aa12.7□□□□□ -0.38
TRIM28-203ENST00000593582 ZNF816-ZNF321PA0A0X1KG74 233 aa12.7□□□□□ -0.38
TRIM28-203ENST00000593582 TMEM210A6NLX4 147 aa12.7□□□□□ -0.38
TRIM28-203ENST00000593582 CDIPTO14735 213 aa12.7□□□□□ -0.38
TRIM28-203ENST00000593582 TNFRSF13BO14836 293 aaPredicted RBP12.7□□□□□ -0.38
TRIM28-203ENST00000593582 TMPRSS2O15393 492 aa12.7□□□□□ -0.38
TRIM28-203ENST00000593582 MUC1P15941 1255 aaPredicted RBP12.7□□□□□ -0.38
TRIM28-203ENST00000593582 EGR1P18146 543 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms