RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 DHX35Q9H5Z1 703 aaKnown RBP3.83□□□□□ -1.8
SMAD4-216ENST00000593223 ASB7Q9H672 318 aa3.83□□□□□ -1.8
SMAD4-216ENST00000593223 ARMC7Q9H6L4 198 aa3.83□□□□□ -1.8
SMAD4-216ENST00000593223 PATZ1Q9HBE1 687 aaKnown RBP3.83□□□□□ -1.8
SMAD4-216ENST00000593223 XPNPEP1Q9NQW7 623 aa3.83□□□□□ -1.8
SMAD4-216ENST00000593223 PARVAQ9NVD7 372 aa3.83□□□□□ -1.8
SMAD4-216ENST00000593223 VAPAQ9P0L0 249 aa3.83□□□□□ -1.8
SMAD4-216ENST00000593223 GALPQ9UBC7 116 aa3.83□□□□□ -1.8
SMAD4-216ENST00000593223 FBXL3Q9UKT7 428 aa3.83□□□□□ -1.8
SMAD4-216ENST00000593223 GUCA1BQ9UMX6 200 aa3.83□□□□□ -1.8
SMAD4-216ENST00000593223 TFR2Q9UP52 801 aa3.83□□□□□ -1.8
SMAD4-216ENST00000593223 SLC17A4Q9Y2C5 497 aa3.83□□□□□ -1.8
SMAD4-216ENST00000593223 YARS2Q9Y2Z4 477 aaKnown RBP3.83□□□□□ -1.8
SMAD4-216ENST00000593223 GMPPBQ9Y5P6 360 aa3.83□□□□□ -1.8
SMAD4-216ENST00000593223 ARL5AQ9Y689 179 aa3.83□□□□□ -1.8
SMAD4-216ENST00000593223 ZNF532Q9HCE3 1301 aa3.83□□□□□ -1.8
SMAD4-216ENST00000593223 ATG2AQ2TAZ0 1938 aa3.83□□□□□ -1.8
SMAD4-216ENST00000593223 UTP20O75691 2785 aaKnown RBP3.83□□□□□ -1.8
SMAD4-216ENST00000593223 TET1Q8NFU7 2136 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 CCDC171Q6TFL3 1326 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 TRBV7-9A0A0J9YWB2 115 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 A0A1B0GVI7 797 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 VPS37CA5D8V6 355 aaPredicted RBP3.82□□□□□ -1.8
SMAD4-216ENST00000593223 A6NIZ1 184 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 RPL37AP8A6NKH3 93 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 FAM74A7A6NL05 159 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 ZNF729A6NN14 1252 aaPredicted RBP3.82□□□□□ -1.8
SMAD4-216ENST00000593223 H0Y980 276 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 M0QZ92 97 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 PPP1R2P9O14990 202 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 MAGEB4O15481 346 aaPredicted RBP3.82□□□□□ -1.8
SMAD4-216ENST00000593223 ATP5LO75964 103 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 TOXO94900 526 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 GLSO94925 669 aaPredicted RBP3.82□□□□□ -1.8
SMAD4-216ENST00000593223 IGHG4P01861 327 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 TCRBP04435 133 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 XRCC1P18887 633 aaPredicted RBP3.82□□□□□ -1.8
SMAD4-216ENST00000593223 GCAP28676 217 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 SPRP35270 261 aaPredicted RBP3.82□□□□□ -1.8
SMAD4-216ENST00000593223 BRCC3P46736 316 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 GNPDA1P46926 289 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 OMPP47874 163 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 CSNK1A1P48729 337 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 TMED10P49755 219 aaKnown RBP3.82□□□□□ -1.8
SMAD4-216ENST00000593223 GSK3BP49841 420 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 CLDN6P56747 220 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 PSME3P61289 254 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 RPS4XP62701 263 aaKnown RBP3.82□□□□□ -1.8
SMAD4-216ENST00000593223 C2orf80Q0P641 193 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 GPNMBQ14956 572 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 SPA17Q15506 151 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 PGGHGQ32M88 737 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 FAM74A3Q4VXF1 159 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 TP53I3Q53FA7 332 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 SPIN3Q5JUX0 258 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 BRMS1LQ5PSV4 323 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 LCE3CQ5T5A8 94 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 DUPD1Q68J44 220 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 REG3GQ6UW15 175 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 DRAM2Q6UX65 266 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 LANCL3Q6ZV70 420 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 NUFIP2Q7Z417 695 aaKnown RBP3.82□□□□□ -1.8
SMAD4-216ENST00000593223 TMED4Q7Z7H5 227 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 TRAPPC5Q8IUR0 188 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 FAM71AQ8IYT1 594 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 STK40Q8N2I9 435 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.82□□□□□ -1.8
SMAD4-216ENST00000593223 CSNK1G2-AS1Q8NCQ2 148 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 OR56A4Q8NGH8 313 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 OR6K6Q8NGW6 343 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 LYPD6BQ8NI32 183 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 MCOLN3Q8TDD5 553 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 SETD7Q8WTS6 366 aaKnown RBP3.82□□□□□ -1.8
SMAD4-216ENST00000593223 STMN2Q93045 179 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 C18orf25Q96B23 403 aaPredicted RBP3.82□□□□□ -1.8
SMAD4-216ENST00000593223 PPWD1Q96BP3 646 aaKnown RBP3.82□□□□□ -1.8
SMAD4-216ENST00000593223 DGCR14Q96DF8 476 aaKnown RBP3.82□□□□□ -1.8
SMAD4-216ENST00000593223 SDSLQ96GA7 329 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 ZNF75AQ96N20 296 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 ATP5SQ99766 215 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 DDA1Q9BW61 102 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 ULBP1Q9BZM6 244 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 BCL2L14Q9BZR8 327 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 LIME1Q9H400 295 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 RNF41Q9H4P4 317 aaPredicted RBP3.82□□□□□ -1.8
SMAD4-216ENST00000593223 NHEJ1Q9H9Q4 299 aaPredicted RBP3.82□□□□□ -1.8
SMAD4-216ENST00000593223 SPANXB1Q9NS25 103 aaPredicted RBP3.82□□□□□ -1.8
SMAD4-216ENST00000593223 DCAF13Q9NV06 445 aaKnown RBP3.82□□□□□ -1.8
SMAD4-216ENST00000593223 GID8Q9NWU2 228 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 SIGLEC8Q9NYZ4 499 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 TMEM9Q9P0T7 183 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 PSG11Q9UQ72 335 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 ARL2BPQ9Y2Y0 163 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 AK6Q9Y3D8 172 aaKnown RBP3.82□□□□□ -1.8
SMAD4-216ENST00000593223 CPQQ9Y646 472 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 USH1CQ9Y6N9 552 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 PTPRQQ9UMZ3 2332 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 HCFC1P51610 2035 aa3.82□□□□□ -1.8
SMAD4-216ENST00000593223 SPEF2Q9C093 1822 aa3.81□□□□□ -1.8
SMAD4-216ENST00000593223 NPIPA5A0A0B4J1W7 369 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms