RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 COL7A1Q02388 2944 aa10.32□□□□□ -0.76
SS18-219ENST00000581570 TENM3Q9P273 2699 aa10.31□□□□□ -0.76
SS18-219ENST00000581570 E9PQ18 207 aa10.31□□□□□ -0.76
SS18-219ENST00000581570 CDIPTO14735 213 aa10.31□□□□□ -0.76
SS18-219ENST00000581570 TIPRLO75663 272 aa10.31□□□□□ -0.76
SS18-219ENST00000581570 TROVE2P10155 538 aaKnown RBP eCLIP10.31□□□□□ -0.76
SS18-219ENST00000581570 PF4V1P10720 104 aa10.31□□□□□ -0.76
SS18-219ENST00000581570 FXYD6P3P58550 94 aa10.31□□□□□ -0.76
SS18-219ENST00000581570 SLC35A2P78381 396 aa10.31□□□□□ -0.76
SS18-219ENST00000581570 DGUOKQ16854 277 aa10.31□□□□□ -0.76
SS18-219ENST00000581570 DRAM2Q6UX65 266 aa10.31□□□□□ -0.76
SS18-219ENST00000581570 ZNF788Q6ZQV5 615 aa10.31□□□□□ -0.76
SS18-219ENST00000581570 RCC1LQ96I51 464 aaKnown RBP10.31□□□□□ -0.76
SS18-219ENST00000581570 RSRC1Q96IZ7 334 aaKnown RBP10.31□□□□□ -0.76
SS18-219ENST00000581570 ERMAPQ96PL5 475 aaPredicted RBP10.31□□□□□ -0.76
SS18-219ENST00000581570 GAFA1Q96PS6 74 aa10.31□□□□□ -0.76
SS18-219ENST00000581570 NMNAT3Q96T66 252 aa10.31□□□□□ -0.76
SS18-219ENST00000581570 TMEM120AQ9BXJ8 343 aa10.31□□□□□ -0.76
SS18-219ENST00000581570 PRSS22Q9GZN4 317 aa10.31□□□□□ -0.76
SS18-219ENST00000581570 OPA3Q9H6K4 179 aa10.31□□□□□ -0.76
SS18-219ENST00000581570 TRBV23-1A0A0A0MS06 115 aa10.3□□□□□ -0.76
SS18-219ENST00000581570 FAM220BPB1ANY3 271 aa10.3□□□□□ -0.76
SS18-219ENST00000581570 FXYD1O00168 92 aa10.3□□□□□ -0.76
SS18-219ENST00000581570 DUS4LO95620 317 aaKnown RBP10.3□□□□□ -0.76
SS18-219ENST00000581570 PF4P02776 101 aa10.3□□□□□ -0.76
SS18-219ENST00000581570 TFF1P04155 84 aa10.3□□□□□ -0.76
SS18-219ENST00000581570 ZNF823P16415 610 aa10.3□□□□□ -0.76
SS18-219ENST00000581570 PAICSP22234 425 aaKnown RBP10.3□□□□□ -0.76
SS18-219ENST00000581570 OTX1P32242 354 aaPredicted RBP10.3□□□□□ -0.76
SS18-219ENST00000581570 PRKXP51817 358 aa10.3□□□□□ -0.76
SS18-219ENST00000581570 LGALS4P56470 323 aa10.3□□□□□ -0.76
SS18-219ENST00000581570 CAV3P56539 151 aa10.3□□□□□ -0.76
SS18-219ENST00000581570 COL10A1Q03692 680 aa10.3□□□□□ -0.76
SS18-219ENST00000581570 CNN3Q15417 329 aaKnown RBP10.3□□□□□ -0.76
SS18-219ENST00000581570 ARSJQ5FYB0 599 aaPredicted RBP10.3□□□□□ -0.76
SS18-219ENST00000581570 ZBTB46Q86UZ6 589 aa10.3□□□□□ -0.76
SS18-219ENST00000581570 OR2T12Q8NG77 320 aa10.3□□□□□ -0.76
SS18-219ENST00000581570 OR4K13Q8NH42 304 aa10.3□□□□□ -0.76
SS18-219ENST00000581570 RAB3IPQ96QF0 476 aaPredicted RBP10.3□□□□□ -0.76
SS18-219ENST00000581570 CDCA4Q9BXL8 241 aa10.3□□□□□ -0.76
SS18-219ENST00000581570 WDR13Q9H1Z4 485 aa10.3□□□□□ -0.76
SS18-219ENST00000581570 ANKRD19PQ9H560 264 aa10.3□□□□□ -0.76
SS18-219ENST00000581570 RPRD1BQ9NQG5 326 aaKnown RBP10.3□□□□□ -0.76
SS18-219ENST00000581570 MRPL22Q9NWU5 206 aaKnown RBP10.3□□□□□ -0.76
SS18-219ENST00000581570 KCNG2Q9UJ96 466 aa10.3□□□□□ -0.76
SS18-219ENST00000581570 UNC119BA6NIH7 251 aa10.29□□□□□ -0.76
SS18-219ENST00000581570 SIGLEC5O15389 551 aa10.29□□□□□ -0.76
SS18-219ENST00000581570 XRCC2O43543 280 aa10.29□□□□□ -0.76
SS18-219ENST00000581570 GLCEO94923 617 aa10.29□□□□□ -0.76
SS18-219ENST00000581570 ACAA1P09110 424 aaPredicted RBP10.29□□□□□ -0.76
SS18-219ENST00000581570 SLC2A1P11166 492 aa10.29□□□□□ -0.76
SS18-219ENST00000581570 HIST1H1CP16403 213 aaKnown RBP10.29□□□□□ -0.76
SS18-219ENST00000581570 OMPP47874 163 aa10.29□□□□□ -0.76
SS18-219ENST00000581570 CD83Q01151 205 aa10.29□□□□□ -0.76
SS18-219ENST00000581570 IFI44LQ53G44 452 aa10.29□□□□□ -0.76
SS18-219ENST00000581570 SMARCD3Q6STE5 483 aa10.29□□□□□ -0.76
SS18-219ENST00000581570 CYP4Z1Q86W10 505 aa10.29□□□□□ -0.76
SS18-219ENST00000581570 MKXQ8IYA7 352 aa10.29□□□□□ -0.76
SS18-219ENST00000581570 FAM185AQ8N0U4 392 aa10.29□□□□□ -0.76
SS18-219ENST00000581570 OR10Z1Q8NGY1 313 aa10.29□□□□□ -0.76
SS18-219ENST00000581570 ANGPTL6Q8NI99 470 aa10.29□□□□□ -0.76
SS18-219ENST00000581570 STON2Q8WXE9 905 aa10.29□□□□□ -0.76
SS18-219ENST00000581570 HEXA-AS1Q9H8Q6 139 aa10.29□□□□□ -0.76
SS18-219ENST00000581570 ELL3Q9HB65 397 aaPredicted RBP10.29□□□□□ -0.76
SS18-219ENST00000581570 TMBIM4Q9HC24 238 aa10.29□□□□□ -0.76
SS18-219ENST00000581570 TCF19Q9Y242 345 aa10.29□□□□□ -0.76
SS18-219ENST00000581570 ZNF682O95780 498 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 NPPAP01160 153 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 NOS3P29474 1203 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 HOXD3P31249 432 aaPredicted RBP10.28□□□□□ -0.76
SS18-219ENST00000581570 GNALP38405 381 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 RPS27P42677 84 aaKnown RBP10.28□□□□□ -0.76
SS18-219ENST00000581570 VDAC2P45880 294 aaPredicted RBP10.28□□□□□ -0.76
SS18-219ENST00000581570 GABRA2P47869 451 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 RAB13P51153 203 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 SLC7A2P52569 658 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 MXRA7P84157 204 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 FAM3AP98173 230 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 EGFEM1PQ0D2K5 195 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 TAF13Q15543 124 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 PLA1AQ53H76 456 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 FKBP9P1Q75LS8 142 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 SLC16A9Q7RTY1 509 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 CPLX4Q7Z7G2 160 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 TMEM219Q86XT9 240 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 CYB561A3Q8NBI2 242 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 OR5AU1Q8NGC0 362 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 OR4C15Q8NGM1 316 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 SPSB4Q96A44 273 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 KCNJ15Q99712 375 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 MICU1Q9BPX6 476 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 COPS4Q9BT78 406 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 TLNRD1Q9H1K6 362 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 FN3KQ9H479 309 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 PPP1R3EQ9H7J1 279 aa10.28□□□□□ -0.76
SS18-219ENST00000581570 OR6C68A6NDL8 312 aa10.27□□□□□ -0.77
SS18-219ENST00000581570 A6NDX4 124 aa10.27□□□□□ -0.77
SS18-219ENST00000581570 VGLL3A8MV65 326 aa10.27□□□□□ -0.77
SS18-219ENST00000581570 C3orf84H3BNL1 204 aa10.27□□□□□ -0.77
SS18-219ENST00000581570 MRASO14807 208 aa10.27□□□□□ -0.77
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