RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 OPN4Q9UHM6 478 aa12.41□□□□□ -0.42
SS18-212ENST00000579061 COPS3Q9UNS2 423 aa12.41□□□□□ -0.42
SS18-212ENST00000579061 RHBDD3Q9Y3P4 386 aa12.41□□□□□ -0.42
SS18-212ENST00000579061 TRAV38-1A0A0B4J264 116 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 SAC3D1A6NKF1 404 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 A6NLC8 198 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 ANXA2P2A6NMY6 339 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 H3BNX3 289 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 M0R129 80 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 CST4P01036 141 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 LHBP01229 141 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 GRPP07492 148 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 EPHA1P21709 976 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 CFHR2P36980 270 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 PSMB10P40306 273 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 MAP2K3P46734 347 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 PITPNBP48739 271 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 NPY4RP50391 375 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 GNB2P62879 340 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 PAX2Q02962 417 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 POU4F2Q12837 409 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 TMED1Q13445 227 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 KRTAP24-1Q3LI83 254 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 USP43Q70EL4 1123 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 SLC35F2Q8IXU6 374 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 GALNT4Q8N4A0 578 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 OR1M1Q8NGA1 313 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 ZNF418Q8TF45 676 aaPredicted RBP12.4□□□□□ -0.42
SS18-212ENST00000579061 ITPKCQ96DU7 683 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 LYZL4Q96KX0 146 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 PKP2Q99959 881 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 MICU1Q9BPX6 476 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 PAPOLGQ9BWT3 736 aaKnown RBP12.4□□□□□ -0.42
SS18-212ENST00000579061 RIBC2Q9H4K1 309 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 C1orf123Q9NWV4 160 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 CLN6Q9NWW5 311 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 USE1Q9NZ43 259 aa12.4□□□□□ -0.42
SS18-212ENST00000579061 OOEPA6NGQ2 149 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 TMEM210A6NLX4 147 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 ZNF670-ZNF695F2Z2N8 137 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 TNFRSF13BO14836 293 aaPredicted RBP12.39□□□□□ -0.43
SS18-212ENST00000579061 IGLV3-1P01715 115 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 ALPLP05186 524 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 PPIAL4GP0DN37 164 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 ACKR3P25106 362 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 HTR1FP30939 366 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 POLR2IP36954 125 aaKnown RBP12.39□□□□□ -0.43
SS18-212ENST00000579061 CDC42P60953 191 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 CXCR4P61073 352 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 PAX8Q06710 450 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 EGR3Q06889 387 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 TEX36Q5VZQ5 186 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 ZNF322Q6U7Q0 402 aaPredicted RBP12.39□□□□□ -0.43
SS18-212ENST00000579061 WDR86Q86TI4 376 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 C11orf53Q8IXP5 236 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 GCSAMQ8N6F7 178 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 TRUB1Q8WWH5 349 aaKnown RBP12.39□□□□□ -0.43
SS18-212ENST00000579061 RAB40AQ8WXH6 277 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 DACT3Q96B18 629 aaPredicted RBP12.39□□□□□ -0.43
SS18-212ENST00000579061 MRI1Q9BV20 369 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 RTL8AQ9BWD3 113 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 PBOV1Q9GZY1 135 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 TLNRD1Q9H1K6 362 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 OCEL1Q9H607 264 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 MOB1AQ9H8S9 216 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 CLN8Q9UBY8 286 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 NUFIP1Q9UHK0 495 aaKnown RBP12.39□□□□□ -0.43
SS18-212ENST00000579061 IKZF2Q9UKS7 526 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 ORC6Q9Y5N6 252 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 AUP1Q9Y679 476 aa12.39□□□□□ -0.43
SS18-212ENST00000579061 STAB1Q9NY15 2570 aa12.38□□□□□ -0.43
SS18-212ENST00000579061 hCG_1807616A0A1W2PRN6 198 aa12.38□□□□□ -0.43
SS18-212ENST00000579061 PRR32B1ATL7 298 aa12.38□□□□□ -0.43
SS18-212ENST00000579061 PSMD9O00233 223 aa12.38□□□□□ -0.43
SS18-212ENST00000579061 ADRA2CP18825 462 aa12.38□□□□□ -0.43
SS18-212ENST00000579061 PRDX4Q13162 271 aa12.38□□□□□ -0.43
SS18-212ENST00000579061 C11orf91Q3C1V1 193 aa12.38□□□□□ -0.43
SS18-212ENST00000579061 FAM76BQ5HYJ3 339 aa12.38□□□□□ -0.43
SS18-212ENST00000579061 ZBTB37Q5TC79 503 aa12.38□□□□□ -0.43
SS18-212ENST00000579061 WDR25Q64LD2 544 aaPredicted RBP12.38□□□□□ -0.43
SS18-212ENST00000579061 LYPD2Q6UXB3 125 aa12.38□□□□□ -0.43
SS18-212ENST00000579061 BTNL3Q6UXE8 466 aa12.38□□□□□ -0.43
SS18-212ENST00000579061 ZNF841Q6ZN19 808 aa12.38□□□□□ -0.43
SS18-212ENST00000579061 ZNF826PQ6ZT77 177 aa12.38□□□□□ -0.43
SS18-212ENST00000579061 HRASLS5Q96KN8 279 aa12.38□□□□□ -0.43
SS18-212ENST00000579061 RAB3IPQ96QF0 476 aaPredicted RBP12.38□□□□□ -0.43
SS18-212ENST00000579061 ERVK-18Q9QC07 812 aa12.38□□□□□ -0.43
SS18-212ENST00000579061 IGHV2-70DA0A0C4DH43 119 aa12.37□□□□□ -0.43
SS18-212ENST00000579061 ZNF816-ZNF321PA0A0X1KG74 233 aa12.37□□□□□ -0.43
SS18-212ENST00000579061 ZNF850A8MQ14 1090 aa12.37□□□□□ -0.43
SS18-212ENST00000579061 EI24O14681 340 aa12.37□□□□□ -0.43
SS18-212ENST00000579061 SRSF10O75494 262 aaKnown RBP12.37□□□□□ -0.43
SS18-212ENST00000579061 OR2T7P0C7T2 308 aa12.37□□□□□ -0.43
SS18-212ENST00000579061 MUC1P15941 1255 aaPredicted RBP12.37□□□□□ -0.43
SS18-212ENST00000579061 CD80P33681 288 aa12.37□□□□□ -0.43
SS18-212ENST00000579061 ALDH3A2P51648 485 aa12.37□□□□□ -0.43
SS18-212ENST00000579061 SFRP4Q6FHJ7 346 aaPredicted RBP12.37□□□□□ -0.43
SS18-212ENST00000579061 WDR82Q6UXN9 313 aa12.37□□□□□ -0.43
SS18-212ENST00000579061 ZDHHC23Q8IYP9 409 aa12.37□□□□□ -0.43
SS18-212ENST00000579061 BOLLQ8N9W6 283 aaKnown RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms