RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 SLC1A1P43005 524 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 NOVA1P51513 510 aaKnown RBP3.45□□□□□ -1.86
NUP88-213ENST00000576862 ZNF133P52736 654 aaPredicted RBP3.45□□□□□ -1.86
NUP88-213ENST00000576862 RPL8P62917 257 aaKnown RBP3.45□□□□□ -1.86
NUP88-213ENST00000576862 ERVK-25P63136 954 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 OC90Q02509 493 aaPredicted RBP3.45□□□□□ -1.86
NUP88-213ENST00000576862 EGFEM1PQ0D2K5 195 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 PDIA2Q13087 525 aaKnown RBP3.45□□□□□ -1.86
NUP88-213ENST00000576862 GUK1Q16774 197 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 CHRFAM7AQ494W8 412 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 COX19Q49B96 90 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 TEX30Q5JUR7 227 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 METTL21CQ5VZV1 264 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 IL34Q6ZMJ4 242 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 CYS1Q717R9 158 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 TMEM179BQ7Z7N9 219 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 LHFPL3Q86UP9 236 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 UNC93AQ86WB7 457 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 IFNEQ86WN2 208 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 UBL4BQ8N7F7 174 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 LRRC75AQ8NAA5 344 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 CATSPER1Q8NEC5 780 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 OR4A4PQ8NGN8 299 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 OR1F12Q8NHA8 337 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 JOSD2Q8TAC2 188 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 NANPQ8TBE9 248 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 ACTL9Q8TC94 416 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 ACOT11Q8WXI4 607 aaPredicted RBP3.45□□□□□ -1.86
NUP88-213ENST00000576862 ELSPBP1Q96BH3 223 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 S100PBPQ96BU1 408 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 ZNF799Q96GE5 643 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 PACRGQ96M98 296 aaPredicted RBP3.45□□□□□ -1.86
NUP88-213ENST00000576862 RNF145Q96MT1 663 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 DCUN1D5Q9BTE7 237 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 RSG1Q9BU20 258 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 ZNF426Q9BUY5 554 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 COMMD4Q9H0A8 199 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 NEUROG2Q9H2A3 272 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 WDR55Q9H6Y2 383 aaPredicted RBP3.45□□□□□ -1.86
NUP88-213ENST00000576862 VCX3AQ9NNX9 186 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 ASCL3Q9NQ33 180 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 FAM49BQ9NUQ9 324 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 PARVAQ9NVD7 372 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 GPATCH2LQ9NWQ4 482 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 NPIPA1Q9UND3 350 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 GMPPBQ9Y5P6 360 aa3.45□□□□□ -1.86
NUP88-213ENST00000576862 TSSC4Q9Y5U2 329 aaPredicted RBP3.45□□□□□ -1.86
NUP88-213ENST00000576862 RAI1Q7Z5J4 1906 aaPredicted RBP3.44□□□□□ -1.86
NUP88-213ENST00000576862 TRBV9A0A0B4J1U6 114 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 A0A1W2PQL4 384 aaPredicted RBP3.44□□□□□ -1.86
NUP88-213ENST00000576862 SIGLEC16A6NMB1 481 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 H3BQF6 201 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 SMLR1H3BR10 107 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 M0R3G1 203 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 GOSR2O14653 212 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 ATP8B1O43520 1251 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 PSTPIP1O43586 416 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 HUS1O60921 280 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 ENTPD5O75356 428 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 HSBP1O75506 76 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 LYPLA1O75608 230 aaPredicted RBP3.44□□□□□ -1.86
NUP88-213ENST00000576862 FARS2O95363 451 aaKnown RBP3.44□□□□□ -1.86
NUP88-213ENST00000576862 GSTT2P0CG29 244 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 GSTT2BP0CG30 244 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 MYL2P10916 166 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 ZNF43P17038 809 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 WARSP23381 471 aaKnown RBP3.44□□□□□ -1.86
NUP88-213ENST00000576862 HLA-DMAP28067 261 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 PSMB5P28074 263 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 ADORA2BP29275 332 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 CEACAM3P40198 252 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 MAGEA6P43360 314 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 IDH2P48735 452 aaKnown RBP3.44□□□□□ -1.86
NUP88-213ENST00000576862 MRPS11P82912 194 aaKnown RBP3.44□□□□□ -1.86
NUP88-213ENST00000576862 VLDLRP98155 873 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 SLC25A11Q02978 314 aaKnown RBP3.44□□□□□ -1.86
NUP88-213ENST00000576862 GPNMBQ14956 572 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 PSG5Q15238 335 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 TNXAQ16473 311 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 VPS26BQ4G0F5 336 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 DCST2Q5T1A1 773 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 PVRIGQ6DKI7 326 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 DCUN1D2Q6PH85 259 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 TMEM184AQ6ZMB5 413 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 FAM183BPQ6ZVS7 135 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 PGAP1Q75T13 922 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 HSD11B1LQ7Z5J1 315 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 HSD17B13Q7Z5P4 300 aaPredicted RBP3.44□□□□□ -1.86
NUP88-213ENST00000576862 MOB3BQ86TA1 216 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 SLC38A6Q8IZM9 456 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 JAGN1Q8N5M9 183 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 TMEM156Q8N614 296 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 ZNF738Q8NE65 137 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 B3GNT7Q8NFL0 401 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 STXBP6Q8NFX7 210 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 OR2A12Q8NGT7 310 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 PHF10Q8WUB8 498 aaKnown RBP3.44□□□□□ -1.86
NUP88-213ENST00000576862 C1orf54Q8WWF1 131 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 AP3S1Q92572 193 aa3.44□□□□□ -1.86
NUP88-213ENST00000576862 WFIKKN1Q96NZ8 548 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms