RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 NMNAT2Q9BZQ4 307 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 C16orf95Q9H693 158 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 DUX4Q9UBX2 424 aa17.34■□□□□ 0.37
VPS53-216ENST00000574029 GYG2O15488 501 aa17.33■□□□□ 0.36
VPS53-216ENST00000574029 DNAL1Q4LDG9 190 aa17.33■□□□□ 0.36
VPS53-216ENST00000574029 WDR38Q5JTN6 314 aa17.33■□□□□ 0.36
VPS53-216ENST00000574029 ZNF770Q6IQ21 691 aaPredicted RBP17.33■□□□□ 0.36
VPS53-216ENST00000574029 LCN8Q6JVE9 175 aa17.33■□□□□ 0.36
VPS53-216ENST00000574029 WDR82Q6UXN9 313 aa17.33■□□□□ 0.36
VPS53-216ENST00000574029 RASSF6Q6ZTQ3 369 aa17.33■□□□□ 0.36
VPS53-216ENST00000574029 DPY19L4Q7Z388 723 aa17.33■□□□□ 0.36
VPS53-216ENST00000574029 DHFR2Q86XF0 187 aa17.33■□□□□ 0.36
VPS53-216ENST00000574029 LINC00471Q8N535 108 aa17.33■□□□□ 0.36
VPS53-216ENST00000574029 OR9Q2Q8NGE9 314 aa17.33■□□□□ 0.36
VPS53-216ENST00000574029 NPRL2Q8WTW4 380 aa17.33■□□□□ 0.36
VPS53-216ENST00000574029 LRTOMTQ8WZ04 291 aa17.33■□□□□ 0.36
VPS53-216ENST00000574029 UBE2FQ969M7 185 aa17.33■□□□□ 0.36
VPS53-216ENST00000574029 SGK3Q96BR1 496 aa17.33■□□□□ 0.36
VPS53-216ENST00000574029 ASB9Q96DX5 294 aa17.33■□□□□ 0.36
VPS53-216ENST00000574029 THTPAQ9BU02 230 aa17.33■□□□□ 0.36
VPS53-216ENST00000574029 FAM96BQ9Y3D0 163 aa17.33■□□□□ 0.36
VPS53-216ENST00000574029 LYVE1Q9Y5Y7 322 aa17.33■□□□□ 0.36
VPS53-216ENST00000574029 SLC22A31A6NKX4 558 aa17.32■□□□□ 0.36
VPS53-216ENST00000574029 GPR37O15354 613 aa17.32■□□□□ 0.36
VPS53-216ENST00000574029 TBX1O43435 398 aa17.32■□□□□ 0.36
VPS53-216ENST00000574029 TIPRLO75663 272 aa17.32■□□□□ 0.36
VPS53-216ENST00000574029 GASTP01350 101 aa17.32■□□□□ 0.36
VPS53-216ENST00000574029 GYPBP06028 91 aa17.32■□□□□ 0.36
VPS53-216ENST00000574029 ATP6V1B2P21281 511 aa17.32■□□□□ 0.36
VPS53-216ENST00000574029 SLC15A1P46059 708 aa17.32■□□□□ 0.36
VPS53-216ENST00000574029 SLC25A1P53007 311 aa17.32■□□□□ 0.36
VPS53-216ENST00000574029 GRB2P62993 217 aaKnown RBP17.32■□□□□ 0.36
VPS53-216ENST00000574029 CRMP1Q14194 572 aa17.32■□□□□ 0.36
VPS53-216ENST00000574029 CYP2R1Q6VVX0 501 aa17.32■□□□□ 0.36
VPS53-216ENST00000574029 SLC36A1Q7Z2H8 476 aa17.32■□□□□ 0.36
VPS53-216ENST00000574029 FAM216BQ8N7L0 139 aa17.32■□□□□ 0.36
VPS53-216ENST00000574029 C12orf43Q96C57 262 aaKnown RBP17.32■□□□□ 0.36
VPS53-216ENST00000574029 REEP6Q96HR9 211 aa17.32■□□□□ 0.36
VPS53-216ENST00000574029 TOR3AQ9H497 397 aa17.32■□□□□ 0.36
VPS53-216ENST00000574029 TCF7L1Q9HCS4 588 aa17.32■□□□□ 0.36
VPS53-216ENST00000574029 ZNRD1Q9P1U0 126 aa17.32■□□□□ 0.36
VPS53-216ENST00000574029 ONECUT1Q9UBC0 465 aa17.32■□□□□ 0.36
VPS53-216ENST00000574029 CAB39Q9Y376 341 aaPredicted RBP17.32■□□□□ 0.36
VPS53-216ENST00000574029 WNK1Q9H4A3 2382 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 hCG_38984A0A1B0GV85 526 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 TCRBV5S2A0A599 114 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 DHRS12A0PJE2 317 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 TNFRSF11BO00300 401 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 ACOT8O14734 319 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 FBP1P09467 338 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 SPI1P17947 270 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 AMY2BP19961 511 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 TGM4P49221 684 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 CX3CR1P49238 355 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 CSNK2BP67870 215 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 TIGD6Q17RP2 521 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 PRSS45Q7RTY3 260 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 CLPTM1LQ96KA5 538 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 PKP2Q99959 881 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 TLNRD1Q9H1K6 362 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 SEMA6AQ9H2E6 1030 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 PPP1R3EQ9H7J1 279 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 SP140LQ9H930 580 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 TBC1D23Q9NUY8 699 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 BAIAP2Q9UQB8 552 aa17.31■□□□□ 0.36
VPS53-216ENST00000574029 RNASEK-C17orf49H0YIS7 233 aa17.3■□□□□ 0.36
VPS53-216ENST00000574029 NDUFB3O43676 98 aa17.3■□□□□ 0.36
VPS53-216ENST00000574029 ATP5HO75947 161 aa17.3■□□□□ 0.36
VPS53-216ENST00000574029 TSPAN9O75954 239 aa17.3■□□□□ 0.36
VPS53-216ENST00000574029 TSPAN15O95858 294 aa17.3■□□□□ 0.36
VPS53-216ENST00000574029 ANXA2P07355 339 aaKnown RBP17.3■□□□□ 0.36
VPS53-216ENST00000574029 CLUP10909 449 aa17.3■□□□□ 0.36
VPS53-216ENST00000574029 NAA10P41227 235 aaPredicted RBP17.3■□□□□ 0.36
VPS53-216ENST00000574029 BLVRAP53004 296 aa17.3■□□□□ 0.36
VPS53-216ENST00000574029 GUCA2AQ02747 115 aa17.3■□□□□ 0.36
VPS53-216ENST00000574029 KLHL12Q53G59 568 aa17.3■□□□□ 0.36
VPS53-216ENST00000574029 ATPAF1Q5TC12 328 aaPredicted RBP17.3■□□□□ 0.36
VPS53-216ENST00000574029 LINC01590Q5TEZ4 76 aa17.3■□□□□ 0.36
VPS53-216ENST00000574029 CMTM4Q8IZR5 234 aa17.3■□□□□ 0.36
VPS53-216ENST00000574029 Q8N7P7 452 aa17.3■□□□□ 0.36
VPS53-216ENST00000574029 OR4Q3Q8NH05 313 aa17.3■□□□□ 0.36
VPS53-216ENST00000574029 C8orf46Q8TAG6 207 aa17.3■□□□□ 0.36
VPS53-216ENST00000574029 SEH1LQ96EE3 360 aa17.3■□□□□ 0.36
VPS53-216ENST00000574029 DCTN5Q9BTE1 182 aa17.3■□□□□ 0.36
VPS53-216ENST00000574029 TSSK6Q9BXA6 273 aa17.3■□□□□ 0.36
VPS53-216ENST00000574029 MAGIXQ9H6Y5 334 aa17.3■□□□□ 0.36
VPS53-216ENST00000574029 SIRT7Q9NRC8 400 aa17.3■□□□□ 0.36
VPS53-216ENST00000574029 VPREB3Q9UKI3 123 aa17.3■□□□□ 0.36
VPS53-216ENST00000574029 CDIPTO14735 213 aa17.29■□□□□ 0.36
VPS53-216ENST00000574029 CFL1P23528 166 aaKnown RBP17.29■□□□□ 0.36
VPS53-216ENST00000574029 HSD11B1P28845 292 aa17.29■□□□□ 0.36
VPS53-216ENST00000574029 GSK3AP49840 483 aa17.29■□□□□ 0.36
VPS53-216ENST00000574029 EIF2B1Q14232 305 aaKnown RBP17.29■□□□□ 0.36
VPS53-216ENST00000574029 STUMQ69YW2 141 aa17.29■□□□□ 0.36
VPS53-216ENST00000574029 DHRS7BQ6IAN0 325 aaPredicted RBP17.29■□□□□ 0.36
VPS53-216ENST00000574029 GALNT4Q8N4A0 578 aa17.29■□□□□ 0.36
VPS53-216ENST00000574029 OR52H1Q8NGJ2 320 aa17.29■□□□□ 0.36
VPS53-216ENST00000574029 OR6K6Q8NGW6 343 aa17.29■□□□□ 0.36
VPS53-216ENST00000574029 RNF133Q8WVZ7 376 aa17.29■□□□□ 0.36
VPS53-216ENST00000574029 ZNF319Q9P2F9 582 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms