RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, human

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIITA-204	ENST00000570546	OR11H7	Q8NGC8	314 aa		13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	BTF3L4	Q96K17	158 aa		13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	KCNK15	Q9H427	330 aa		13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	HEYL	Q9NQ87	328 aa	Predicted RBP	13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	TPPP	O94811	219 aa		13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	CLDN15	P56746	228 aa		13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	CCL7	P80098	99 aa		13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	SLC38A6	Q8IZM9	456 aa		13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	LSMEM1	Q8N8F7	131 aa		13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	OR2AE1	Q8NHA4	323 aa		13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	TRMT61A	Q96FX7	289 aa	Known RBP	13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	ARHGAP5-AS1	Q96IT6	56 aa		13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	NIT2	Q9NQR4	276 aa		13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	FRRS1L	Q9P0K9	344 aa		13.75	□□□□□ -0.21
CIITA-204	ENST00000570546		K7EQS6	105 aa		13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	SIRPB1	O00241	398 aa		13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	EPPIN	O95925	133 aa		13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	DSCR4	P56555	118 aa	Predicted RBP	13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	EDDM3B	P56851	147 aa		13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	OR8G1	Q15617	311 aa		13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	ROBO4	Q8WZ75	1007 aa		13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	DUSP13	Q9UII6	198 aa		13.75	□□□□□ -0.21
CIITA-204	ENST00000570546	PTPRF	P10586	1907 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	C4orf47	A7E2U8	309 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	HSBP1L1	C9JCN9	74 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	CBR3	O75828	277 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	CPN1	P15169	458 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	CTLA4	P16410	223 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	DHODH	Q02127	395 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	ZNF239	Q16600	458 aa	Known RBP	13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	MEST	Q5EB52	335 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	ZNF770	Q6IQ21	691 aa	Predicted RBP	13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	DEGS2	Q6QHC5	323 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	IL34	Q6ZMJ4	242 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	ZDHHC23	Q8IYP9	409 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	VSTM2L	Q96N03	204 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	TRIM64B	A6NI03	449 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	LEUTX	A8MZ59	168 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	GCM2	O75603	506 aa	Predicted RBP	13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	POU2F2	P09086	479 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	SELE	P16581	610 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	HAAO	P46952	286 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	FUT7	Q11130	342 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	HMSD	A8MTL9	139 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	ANGPTL7	O43827	346 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	PIAS2	O75928	621 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	MPZL1	O95297	269 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	FUT6	P51993	359 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	ARSJ	Q5FYB0	599 aa	Predicted RBP	13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	ZAR1	Q86SH2	424 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	ZNF573	Q86YE8	665 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	AKR7L	Q8NHP1	331 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	ZNF275	Q9NSD4	429 aa	Predicted RBP	13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	SFT2D2	O95562	160 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	SULT1A3	P0DMM9	295 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	SULT1A4	P0DMN0	295 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	ATG4D	Q86TL0	474 aa	Predicted RBP	13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	TMEM123	Q8N131	208 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	MAGT1	Q9H0U3	335 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	CNTD2	Q9H8S5	307 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	CES1P1	Q9UKY3	287 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	POLDIP2	Q9Y2S7	368 aa		13.74	□□□□□ -0.21
CIITA-204	ENST00000570546	ZNF816-ZNF321P	A0A0X1KG74	233 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	CYR61	O00622	381 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	RER1	O15258	196 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	MOSPD3	O75425	235 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	PEBP1	P30086	187 aa	Known RBP	13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	SRSF5	Q13243	272 aa	Known RBP	13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	CD226	Q15762	336 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	RAB18	Q9NP72	206 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	TUBG2	Q9NRH3	451 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	ZNF230	Q9UIE0	474 aa	Predicted RBP	13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	MYO16	Q9Y6X6	1858 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	SH2D1B	O14796	132 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	LANCL1	O43813	399 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	SPANXN5	Q5MJ07	72 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	TDH	Q8IZJ6	230 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	FAM185A	Q8N0U4	392 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	OR52N4	Q8NGI2	321 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	KCNIP2	Q9NS61	270 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	CYB5B	O43169	146 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	TNFSF14	O43557	240 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	EML2	O95834	649 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	SFTA3	P0C7M3	94 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	THBS3	P49746	956 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	RAB1A	P62820	205 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	KLF9	Q13886	244 aa	Predicted RBP	13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	LCN15	Q6UWW0	184 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	ANKRD37	Q7Z713	158 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	SLC35G3	Q8N808	338 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	OR10G3	Q8NGC4	313 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	DYNLRB1	Q9NP97	96 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	ARID1B	Q8NFD5	2236 aa	Predicted RBP	13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	KISS1	Q15726	138 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	OIT3	Q8WWZ8	545 aa		13.73	□□□□□ -0.21
CIITA-204	ENST00000570546	DAZAP1	Q96EP5	407 aa	Known RBP	13.72	□□□□□ -0.21
CIITA-204	ENST00000570546	RNASEK-C17orf49	H0YIS7	233 aa		13.72	□□□□□ -0.21
CIITA-204	ENST00000570546	OR8B8	Q15620	311 aa		13.72	□□□□□ -0.21
CIITA-204	ENST00000570546	PRSS53	Q2L4Q9	553 aa		13.72	□□□□□ -0.21
CIITA-204	ENST00000570546	TMEM41B	Q5BJD5	291 aa		13.72	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms