RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 BIVMQ86UB2 503 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 ZNF784Q8NCA9 323 aaPredicted RBP9.68□□□□□ -0.86
CLK3-226ENST00000569406 C17orf47Q8NEP4 570 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 OR4K14Q8NGD5 310 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 STT3BQ8TCJ2 826 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 GPR119Q8TDV5 335 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 SPACA9Q96E40 222 aaPredicted RBP9.68□□□□□ -0.86
CLK3-226ENST00000569406 PRRT1Q99946 306 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 AICDAQ9GZX7 198 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 SEMA4GQ9NTN9 838 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 RYDENQ9NUL5 291 aaKnown RBP9.68□□□□□ -0.86
CLK3-226ENST00000569406 F5P12259 2224 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 TRPM6Q9BX84 2022 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 LOC100289279A0A1B0GTE1 492 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 J3QLW9 94 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 PRH1P02810 166 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 FURINP09958 794 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 ZNF19P17023 458 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 CD33P20138 364 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 KLK2P20151 261 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 TEAD1P28347 426 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 TIA1P31483 386 aaKnown RBP eCLIP9.68□□□□□ -0.86
CLK3-226ENST00000569406 SNRPNP63162 240 aaKnown RBP9.68□□□□□ -0.86
CLK3-226ENST00000569406 DLK1P80370 383 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 CDK5Q00535 292 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 EID2Q8N6I1 236 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 OR13C9Q8NGT0 318 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 IL17FQ96PD4 163 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 SLCO5A1Q9H2Y9 848 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 OR51I1Q9H343 314 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 DMRT3Q9NQL9 472 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 PARP11Q9NR21 331 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 SLC2A4RGQ9NR83 387 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 MRPS33Q9Y291 106 aaKnown RBP9.68□□□□□ -0.86
CLK3-226ENST00000569406 HIF3AQ9Y2N7 669 aa9.68□□□□□ -0.86
CLK3-226ENST00000569406 E5RGE8 158 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 M0R3H8 397 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 RNASET2O00584 256 aaKnown RBP9.67□□□□□ -0.86
CLK3-226ENST00000569406 FRS3O43559 492 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 ELAVL4P26378 380 aaKnown RBP9.67□□□□□ -0.86
CLK3-226ENST00000569406 RPS15P62841 145 aaKnown RBP9.67□□□□□ -0.86
CLK3-226ENST00000569406 LASP1Q14847 261 aaKnown RBP9.67□□□□□ -0.86
CLK3-226ENST00000569406 FAM78AQ5JUQ0 283 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 PRAMEF5Q5TYX0 476 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 PRAMEF6Q5VXH4 476 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 KLHL24Q6TFL4 600 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 ZSCAN4Q8NAM6 433 aaPredicted RBP9.67□□□□□ -0.86
CLK3-226ENST00000569406 MYADMQ96S97 322 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 PLA2G12AQ9BZM1 189 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 SLC25A18Q9H1K4 315 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 AURKAIP1Q9NWT8 199 aaPredicted RBP9.67□□□□□ -0.86
CLK3-226ENST00000569406 STEAP1Q9UHE8 339 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 DAPL1A0PJW8 107 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 HYAL3O43820 417 aaPredicted RBP9.67□□□□□ -0.86
CLK3-226ENST00000569406 TBX19O60806 448 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 CD3DP04234 171 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 IL3P08700 152 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 PSG1P11464 419 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 SNCAP37840 140 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 CRYBA4P53673 196 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 HNRNPA1L2Q32P51 320 aaKnown RBP9.67□□□□□ -0.86
CLK3-226ENST00000569406 FAM71E1Q6IPT2 247 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 MED25Q71SY5 747 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 OR9A4Q8NGU2 314 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 ZNF607Q96SK3 696 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 NUDT9Q9BW91 350 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 HSPB7Q9UBY9 170 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 TRAV26-1A0A087WT03 109 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 A0A1W2PPV9 198 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 H0YL77 283 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 HNRNPA1P09651 372 aaKnown RBP eCLIP9.67□□□□□ -0.86
CLK3-226ENST00000569406 DRD3P35462 400 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 MMP16P51512 607 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 GUCA2AQ02747 115 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 COL10A1Q03692 680 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 RBM45Q8IUH3 476 aaKnown RBP9.67□□□□□ -0.86
CLK3-226ENST00000569406 OR4X1Q8NH49 305 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 TMEM239Q8WW34 195 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 IL22RA2Q969J5 263 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 MOAP1Q96BY2 351 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 ADGRL4Q9HBW9 690 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 SLC17A5Q9NRA2 495 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 OR6C3Q9NZP0 311 aa9.67□□□□□ -0.86
CLK3-226ENST00000569406 ZNF814B7Z6K7 855 aa9.66□□□□□ -0.86
CLK3-226ENST00000569406 TLX3O43711 291 aaPredicted RBP9.66□□□□□ -0.86
CLK3-226ENST00000569406 CST4P01036 141 aa9.66□□□□□ -0.86
CLK3-226ENST00000569406 CTSBP07858 339 aa9.66□□□□□ -0.86
CLK3-226ENST00000569406 CD37P11049 281 aa9.66□□□□□ -0.86
CLK3-226ENST00000569406 CEACAM3P40198 252 aa9.66□□□□□ -0.86
CLK3-226ENST00000569406 PCBP3P57721 371 aaKnown RBP9.66□□□□□ -0.86
CLK3-226ENST00000569406 RGS8P57771 180 aaPredicted RBP9.66□□□□□ -0.86
CLK3-226ENST00000569406 TAS2R19P59542 299 aa9.66□□□□□ -0.86
CLK3-226ENST00000569406 TAS2R20P59543 309 aa9.66□□□□□ -0.86
CLK3-226ENST00000569406 P2RY6Q15077 328 aa9.66□□□□□ -0.86
CLK3-226ENST00000569406 HIKESHIQ53FT3 197 aa9.66□□□□□ -0.86
CLK3-226ENST00000569406 DOK4Q8TEW6 326 aa9.66□□□□□ -0.86
CLK3-226ENST00000569406 ZCCHC14Q8WYQ9 949 aaKnown RBP9.66□□□□□ -0.86
CLK3-226ENST00000569406 FAM3CQ92520 227 aa9.66□□□□□ -0.86
CLK3-226ENST00000569406 GHSRQ92847 366 aa9.66□□□□□ -0.86
CLK3-226ENST00000569406 DPH1Q9BZG8 443 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms