RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 C20orf196Q8IYI0 205 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 SFT2D1Q8WV19 159 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 ASB13Q8WXK3 278 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 ADIPOR1Q96A54 375 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 C5orf66Q9H5L9 145 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 IFT22Q9H7X7 185 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 ZNF160Q9HCG1 818 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.85□□□□□ -0.35
VPS35-210ENST00000568784 MMP26Q9NRE1 261 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 FAM230AA0A1W2PPH8 454 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 PRSS44E7EML9 344 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 TNFSF12O43508 249 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 APOC1P02654 83 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 OR13C7P0DN81 318 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 FAHP16930 419 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 MEOX2P50222 304 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 GPR85P60893 370 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 GABREP78334 506 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 SHHQ15465 462 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 HFEQ30201 348 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 ZNF813Q6ZN06 617 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 NAA40Q86UY6 237 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 OR56B1Q8NGI3 324 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 OR1L3Q8NH93 324 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 LIPHQ8WWY8 451 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 SLAMF9Q96A28 289 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 NRIP2Q9BQI9 281 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 ZNF2Q9BSG1 426 aaPredicted RBP12.85□□□□□ -0.35
VPS35-210ENST00000568784 ESRP2Q9H6T0 727 aaKnown RBP12.85□□□□□ -0.35
VPS35-210ENST00000568784 FGF21Q9NSA1 209 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 LPAR3Q9UBY5 353 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 TRBV11-1A0A0K0K1C0 115 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 ANGPTL7O43827 346 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 FOLR1P15328 257 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 OMGP23515 440 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 RPL12P30050 165 aaKnown RBP12.85□□□□□ -0.35
VPS35-210ENST00000568784 LPAR6P43657 344 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 CDCP2Q5VXM1 449 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 SGPP2Q8IWX5 399 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 CLCC1Q96S66 551 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 HDHD3Q9BSH5 251 aaPredicted RBP12.85□□□□□ -0.35
VPS35-210ENST00000568784 SERINC1Q9NRX5 453 aa12.85□□□□□ -0.35
VPS35-210ENST00000568784 WIPF3A6NGB9 483 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 SSX5O60225 188 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 SFT2D2O95562 160 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 IGFBP3P17936 291 aaPredicted RBP12.84□□□□□ -0.35
VPS35-210ENST00000568784 DCAF7P61962 342 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 IGLV3-21P80748 117 aaPredicted RBP12.84□□□□□ -0.35
VPS35-210ENST00000568784 MRPS21P82921 87 aaKnown RBP12.84□□□□□ -0.35
VPS35-210ENST00000568784 HYAL1Q12794 435 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 TSPO2Q5TGU0 170 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 FDX2Q6P4F2 183 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 SUMF1Q8NBK3 374 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 SEMA6DQ8NFY4 1073 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 ST7LQ8TDW4 575 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 HOXB13Q92826 284 aaPredicted RBP12.84□□□□□ -0.35
VPS35-210ENST00000568784 RNF126Q9BV68 326 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 LPAR5Q9H1C0 372 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 SPACA1Q9HBV2 294 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 PUS1Q9Y606 427 aaKnown RBP eCLIP12.84□□□□□ -0.35
VPS35-210ENST00000568784 MS4A18H0YCH9 400 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 CHRM2P08172 466 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 PTGFRP43088 359 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 F2RL1P55085 397 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 MS4A18Q3C1V0 323 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 C1orf100Q5SVJ3 147 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 DNM1P46Q6ZS02 220 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 C6orf201Q7Z4U5 140 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 ASB10Q8WXI3 467 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 FN3KRPQ9HA64 309 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 B3GALT5Q9Y2C3 310 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 MMACHCQ9Y4U1 282 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 WIF1Q9Y5W5 379 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 A0A1B0GTQ1 180 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 CDC14BO60729 498 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 C1QL1O75973 258 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 CLPSP04118 112 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 ARG1P05089 322 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 LAP3P28838 519 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 OR8B12Q8NGG6 310 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 REEP6Q96HR9 211 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 C2orf50Q96LR7 162 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 SLC2A4RGQ9NR83 387 aa12.84□□□□□ -0.35
VPS35-210ENST00000568784 NXT1Q9UKK6 140 aaKnown RBP12.84□□□□□ -0.35
VPS35-210ENST00000568784 TRAV20A0A0B4J274 112 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 BLACEA4D250 179 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 NXPH3O95157 252 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 IGHG1P01857 330 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 QDPRP09417 244 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 FSTP19883 344 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 CD38P28907 300 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 PLAC9Q5JTB6 97 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 PRSS54Q6PEW0 395 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 RBMS3Q6XE24 437 aaKnown RBP12.83□□□□□ -0.36
VPS35-210ENST00000568784 WDFY1Q8IWB7 410 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 MFSD8Q8NHS3 518 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 FBXL17Q9UF56 701 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 IGHV3-15A0A0B4J1V0 119 aa12.83□□□□□ -0.36
VPS35-210ENST00000568784 RAD51DO75771 328 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms