RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 NEK7Q8TDX7 302 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 C22orf15Q8WYQ4 148 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 AP3S1Q92572 193 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 GTF3AQ92664 365 aaKnown RBP2.44□□□□□ -2.02
VPS35-209ENST00000568642 PPWD1Q96BP3 646 aaKnown RBP2.44□□□□□ -2.02
VPS35-209ENST00000568642 MCCC1Q96RQ3 725 aaPredicted RBP2.44□□□□□ -2.02
VPS35-209ENST00000568642 CLCC1Q96S66 551 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 TEAD3Q99594 435 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 RBBP8Q99708 897 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 FOXC2Q99958 501 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 RASL11BQ9BPW5 248 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 CABLES2Q9BTV7 478 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 DUSP26Q9BV47 211 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 CDCA4Q9BXL8 241 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 QTRT1Q9BXR0 403 aaKnown RBP2.44□□□□□ -2.02
VPS35-209ENST00000568642 UGT1A7Q9HAW7 530 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 ZNF71Q9NQZ8 489 aaPredicted RBP2.44□□□□□ -2.02
VPS35-209ENST00000568642 C19orf12Q9NSK7 152 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 HRASLS2Q9NWW9 162 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 ELOVL5Q9NYP7 299 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 NYAP2Q9P242 653 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 ARMCX1Q9P291 453 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 THAP10Q9P2Z0 257 aaPredicted RBP2.44□□□□□ -2.02
VPS35-209ENST00000568642 TESQ9UGI8 421 aaKnown RBP2.44□□□□□ -2.02
VPS35-209ENST00000568642 SLC7A7Q9UM01 511 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 SPATA2Q9UM82 520 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 GUCA1BQ9UMX6 200 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 PSG11Q9UQ72 335 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 AMDHD2Q9Y303 409 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 DHRS7Q9Y394 339 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 USH1CQ9Y6N9 552 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 PRKDCP78527 4128 aaKnown RBP2.44□□□□□ -2.02
VPS35-209ENST00000568642 NOTCH3Q9UM47 2321 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 ANK1P16157 1881 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 INTS1Q8N201 2190 aaKnown RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 ZANQ9Y493 2812 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 MYH4Q9Y623 1939 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 IGLV5-52A0A0A0MRZ9 124 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 TINCRA0A1B0GVN0 87 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 A0A1W2PPI3 338 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 M0QZ92 97 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 SULT1C2O00338 296 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 KPNA3O00505 521 aaPredicted RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 CCL21O00585 134 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 PLPP1O14494 284 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 EI24O14681 340 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 AZIN1O14977 448 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 ATP6V0E1O15342 81 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 SYNGR1O43759 233 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 PRKYO43930 277 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 UGT1A9O60656 530 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 MPDU1O75352 247 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 GAGE7O76087 117 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 UTS2O95399 124 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 ESRRBO95718 433 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 GLUD1P00367 558 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 HLA-AP01891 365 aaKnown RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 HBE1P02100 147 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 CRHP06850 196 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 ZNF883P0CG24 379 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 GAGE12FP0CL80 117 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 GAGE12GP0CL81 117 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 GAGE12IP0CL82 117 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 LIMS3P0CW19 117 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 LIMS4P0CW20 117 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 HIST1H1CP16403 213 aaKnown RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 RAB4AP20338 218 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 M6PRP20645 277 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 FUT3P21217 361 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 CA6P23280 308 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 ATP5A1P25705 553 aaKnown RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 SOX3P41225 446 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 RARRES1P49788 294 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 GSK3BP49841 420 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 PRKXP51817 358 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 STC1P52823 247 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 TAS2R39P59534 338 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 KRTAP10-6P60371 365 aaPredicted RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 PSME3P61289 254 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 RPS18P62269 152 aaKnown RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 ID2Q02363 134 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 ELAVL2Q12926 359 aaKnown RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 GAGE1Q13065 139 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 GAGE4Q13068 117 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 PDIA2Q13087 525 aaKnown RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 OR5I1Q13606 314 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 RAB31Q13636 194 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 TMEM187Q14656 261 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 GNMTQ14749 295 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 KIR2DS3Q14952 304 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 OXA1LQ15070 435 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 NECTIN1Q15223 517 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 GUK1Q16774 197 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 TBC1D28Q2M2D7 210 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 KRTAP15-1Q3LI76 137 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 TMEM176BQ3YBM2 270 aaPredicted RBP2.43□□□□□ -2.02
VPS35-209ENST00000568642 ACSM3Q53FZ2 586 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 VWA2Q5GFL6 755 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 ACER2Q5QJU3 275 aa2.43□□□□□ -2.02
VPS35-209ENST00000568642 SDHAF4Q5VUM1 108 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms