RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 MAP2K3P46734 347 aa14.61□□□□□ -0.07
CLN3-217ENST00000565354 OR12D2P58182 307 aa14.61□□□□□ -0.07
CLN3-217ENST00000565354 MRPS11P82912 194 aaKnown RBP14.61□□□□□ -0.07
CLN3-217ENST00000565354 SRSF2Q01130 221 aaKnown RBP14.61□□□□□ -0.07
CLN3-217ENST00000565354 ODF4Q2M2E3 257 aa14.61□□□□□ -0.07
CLN3-217ENST00000565354 OR8S1Q8NH09 359 aa14.61□□□□□ -0.07
CLN3-217ENST00000565354 OR51E1Q8TCB6 317 aa14.61□□□□□ -0.07
CLN3-217ENST00000565354 PAPOLGQ9BWT3 736 aaKnown RBP14.61□□□□□ -0.07
CLN3-217ENST00000565354 FGF20Q9NP95 211 aaPredicted RBP14.61□□□□□ -0.07
CLN3-217ENST00000565354 GPR84Q9NQS5 396 aa14.61□□□□□ -0.07
CLN3-217ENST00000565354 ERVK13-1Q9NX77 482 aa14.61□□□□□ -0.07
CLN3-217ENST00000565354 TREM2Q9NZC2 230 aa14.61□□□□□ -0.07
CLN3-217ENST00000565354 EFCAB10A6NFE3 127 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 F5H5P2 479 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 MLNRO43193 412 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 PPIHO43447 177 aaKnown RBP14.6□□□□□ -0.07
CLN3-217ENST00000565354 GMDSO60547 372 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 SRSF10O75494 262 aaKnown RBP14.6□□□□□ -0.07
CLN3-217ENST00000565354 TTRP02766 147 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 CRYBB2P43320 205 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 GPR6P46095 362 aaPredicted RBP14.6□□□□□ -0.07
CLN3-217ENST00000565354 MZT1Q08AG7 82 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 ZNF684Q5T5D7 378 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 CYB5R2Q6BCY4 276 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 CATSPERDQ86XM0 798 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 ELMOD2Q8IZ81 293 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 STX19Q8N4C7 294 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 CCL17Q92583 94 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 RORBQ92753 470 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 YIPF5Q969M3 257 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 PPP1R14AQ96A00 147 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 TMEM80Q96HE8 168 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 MEGF10Q96KG7 1140 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 LYZL4Q96KX0 146 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 G6PC2Q9NQR9 355 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 ZNF275Q9NSD4 429 aaPredicted RBP14.6□□□□□ -0.07
CLN3-217ENST00000565354 SLC22A13Q9Y226 551 aa14.6□□□□□ -0.07
CLN3-217ENST00000565354 EXOSC1Q9Y3B2 195 aaKnown RBP14.6□□□□□ -0.07
CLN3-217ENST00000565354 A0A1B0GVI7 797 aa14.59□□□□□ -0.07
CLN3-217ENST00000565354 ANXA2P2A6NMY6 339 aa14.59□□□□□ -0.07
CLN3-217ENST00000565354 CLDN25C9JDP6 229 aa14.59□□□□□ -0.07
CLN3-217ENST00000565354 P2RY10O00398 339 aa14.59□□□□□ -0.07
CLN3-217ENST00000565354 XPNPEP2O43895 674 aa14.59□□□□□ -0.07
CLN3-217ENST00000565354 ATP6V1B1P15313 513 aa14.59□□□□□ -0.07
CLN3-217ENST00000565354 SRD5A1P18405 259 aa14.59□□□□□ -0.07
CLN3-217ENST00000565354 GBX2P52951 348 aaPredicted RBP14.59□□□□□ -0.07
CLN3-217ENST00000565354 SLC3A1Q07837 685 aa14.59□□□□□ -0.07
CLN3-217ENST00000565354 OR8B8Q15620 311 aa14.59□□□□□ -0.07
CLN3-217ENST00000565354 TMPRSS11AQ6ZMR5 421 aa14.59□□□□□ -0.07
CLN3-217ENST00000565354 PEG10Q86TG7 708 aaKnown RBP14.59□□□□□ -0.07
CLN3-217ENST00000565354 KLBQ86Z14 1044 aa14.59□□□□□ -0.07
CLN3-217ENST00000565354 SYS1Q8N2H4 156 aa14.59□□□□□ -0.07
CLN3-217ENST00000565354 KLHL36Q8N4N3 616 aa14.59□□□□□ -0.07
CLN3-217ENST00000565354 SPERTQ8NA61 448 aa14.59□□□□□ -0.07
CLN3-217ENST00000565354 SEMA6DQ8NFY4 1073 aa14.59□□□□□ -0.07
CLN3-217ENST00000565354 GGHQ92820 318 aa14.59□□□□□ -0.07
CLN3-217ENST00000565354 DVL3Q92997 716 aaPredicted RBP14.59□□□□□ -0.07
CLN3-217ENST00000565354 BPESC1Q9GZL8 116 aa14.59□□□□□ -0.07
CLN3-217ENST00000565354 SCN3BQ9NY72 215 aa14.59□□□□□ -0.07
CLN3-217ENST00000565354 CNOT2Q9NZN8 540 aaKnown RBP14.59□□□□□ -0.07
CLN3-217ENST00000565354 IGHV3-64DA0A0J9YX35 117 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 WIPF1O43516 503 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 LMX1BO60663 402 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 DHRS3O75911 302 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 IGHV4-31P0DP07 118 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 PIPP12273 146 aaPredicted RBP14.58□□□□□ -0.08
CLN3-217ENST00000565354 ZNF16P17020 682 aaPredicted RBP14.58□□□□□ -0.08
CLN3-217ENST00000565354 MYF6P23409 242 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 NR4A2P43354 598 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 TMEM33P57088 247 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 CSNK2BP67870 215 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 RIPPLY1Q0D2K3 151 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 ST3GAL4Q11206 333 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 MRPL28Q13084 256 aaKnown RBP14.58□□□□□ -0.08
CLN3-217ENST00000565354 WDR38Q5JTN6 314 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 AHSA2Q719I0 299 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 DOK3Q7L591 496 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 FBLIM1Q8WUP2 373 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 PIGCQ92535 297 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 ITFG2Q969R8 447 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 TIMD4Q96H15 378 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 CNBD2Q96M20 576 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 HIST1H2AAQ96QV6 131 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 SOX7Q9BT81 388 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 ANKRD60Q9BZ19 345 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 Q9H521 79 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 PLEKHA1Q9HB21 404 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 ABCB9Q9NP78 766 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 C14orf119Q9NWQ9 140 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 RAB26Q9ULW5 256 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 DIMT1Q9UNQ2 313 aaKnown RBP14.58□□□□□ -0.08
CLN3-217ENST00000565354 PPP1R3CQ9UQK1 317 aa14.58□□□□□ -0.08
CLN3-217ENST00000565354 TENM1Q9UKZ4 2725 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 ZNF816-ZNF321PA0A0X1KG74 233 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 SYT7O43581 403 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 UBCP0CG48 685 aaKnown RBP14.57□□□□□ -0.08
CLN3-217ENST00000565354 IRF2P14316 349 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 USF1P22415 310 aaPredicted RBP14.57□□□□□ -0.08
CLN3-217ENST00000565354 ACKR3P25106 362 aa14.57□□□□□ -0.08
CLN3-217ENST00000565354 GIFP27352 417 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms