RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 GPR157Q5UAW9 335 aa18.66■□□□□ 0.58
CLN3-215ENST00000565236 TMEM236Q5W0B7 351 aa18.66■□□□□ 0.58
CLN3-215ENST00000565236 WDR86Q86TI4 376 aa18.66■□□□□ 0.58
CLN3-215ENST00000565236 FAM90A1Q86YD7 464 aa18.66■□□□□ 0.58
CLN3-215ENST00000565236 C11orf53Q8IXP5 236 aa18.66■□□□□ 0.58
CLN3-215ENST00000565236 PNLDC1Q8NA58 520 aaKnown RBP18.66■□□□□ 0.58
CLN3-215ENST00000565236 PAPD5Q8NDF8 572 aaKnown RBP18.66■□□□□ 0.58
CLN3-215ENST00000565236 OR1M1Q8NGA1 313 aa18.66■□□□□ 0.58
CLN3-215ENST00000565236 LRRC29Q8WV35 223 aa18.66■□□□□ 0.58
CLN3-215ENST00000565236 PCGF1Q9BSM1 259 aa18.66■□□□□ 0.58
CLN3-215ENST00000565236 IGHV3OR15-7A0A075B7D8 119 aa18.65■□□□□ 0.58
CLN3-215ENST00000565236 ANXA2P2A6NMY6 339 aa18.65■□□□□ 0.58
CLN3-215ENST00000565236 ZNF879B4DU55 563 aa18.65■□□□□ 0.58
CLN3-215ENST00000565236 CLDN34H7C241 214 aa18.65■□□□□ 0.58
CLN3-215ENST00000565236 DNAJC8O75937 253 aaPredicted RBP18.65■□□□□ 0.58
CLN3-215ENST00000565236 RNASE1P07998 156 aaKnown RBP18.65■□□□□ 0.58
CLN3-215ENST00000565236 BPIFB3P59826 476 aa18.65■□□□□ 0.58
CLN3-215ENST00000565236 SLC9A3R2Q15599 337 aa18.65■□□□□ 0.58
CLN3-215ENST00000565236 MICBQ29980 383 aa18.65■□□□□ 0.58
CLN3-215ENST00000565236 TEX36Q5VZQ5 186 aa18.65■□□□□ 0.58
CLN3-215ENST00000565236 BRD3OSQ6XYD6 125 aa18.65■□□□□ 0.58
CLN3-215ENST00000565236 SLC7A6OSQ96CW6 309 aaPredicted RBP18.65■□□□□ 0.58
CLN3-215ENST00000565236 MICU1Q9BPX6 476 aa18.65■□□□□ 0.58
CLN3-215ENST00000565236 PPP1R3EQ9H7J1 279 aa18.65■□□□□ 0.58
CLN3-215ENST00000565236 NIPAL2Q9H841 368 aa18.65■□□□□ 0.58
CLN3-215ENST00000565236 SMURF1Q9HCE7 757 aa18.65■□□□□ 0.58
CLN3-215ENST00000565236 TMPRSS2O15393 492 aa18.64■□□□□ 0.57
CLN3-215ENST00000565236 TOX4O94842 621 aa18.64■□□□□ 0.57
CLN3-215ENST00000565236 MUC1P15941 1255 aaPredicted RBP18.64■□□□□ 0.57
CLN3-215ENST00000565236 EGR1P18146 543 aa18.64■□□□□ 0.57
CLN3-215ENST00000565236 CSNK2BP67870 215 aa18.64■□□□□ 0.57
CLN3-215ENST00000565236 IL5RAQ01344 420 aa18.64■□□□□ 0.57
CLN3-215ENST00000565236 SNAPC1Q16533 368 aa18.64■□□□□ 0.57
CLN3-215ENST00000565236 GALNT4Q8N4A0 578 aa18.64■□□□□ 0.57
CLN3-215ENST00000565236 BBS1Q8NFJ9 593 aa18.64■□□□□ 0.57
CLN3-215ENST00000565236 SGMS2Q8NHU3 365 aa18.64■□□□□ 0.57
CLN3-215ENST00000565236 DNAJC9Q8WXX5 260 aa18.64■□□□□ 0.57
CLN3-215ENST00000565236 ZDHHC16Q969W1 377 aa18.64■□□□□ 0.57
CLN3-215ENST00000565236 SLC25A19Q9HC21 320 aa18.64■□□□□ 0.57
CLN3-215ENST00000565236 TVP23BQ9NYZ1 205 aa18.64■□□□□ 0.57
CLN3-215ENST00000565236 KAAG1Q9UBP8 84 aa18.64■□□□□ 0.57
CLN3-215ENST00000565236 LAMP5Q9UJQ1 280 aa18.64■□□□□ 0.57
CLN3-215ENST00000565236 KLHDC2Q9Y2U9 406 aa18.64■□□□□ 0.57
CLN3-215ENST00000565236 MPC1Q9Y5U8 109 aa18.64■□□□□ 0.57
CLN3-215ENST00000565236 P2RY10O00398 339 aa18.63■□□□□ 0.57
CLN3-215ENST00000565236 DVL1O14640 695 aa18.63■□□□□ 0.57
CLN3-215ENST00000565236 ECDO95905 644 aaPredicted RBP18.63■□□□□ 0.57
CLN3-215ENST00000565236 SFTPBP07988 381 aa18.63■□□□□ 0.57
CLN3-215ENST00000565236 CFHR2P36980 270 aa18.63■□□□□ 0.57
CLN3-215ENST00000565236 APOFQ13790 326 aa18.63■□□□□ 0.57
CLN3-215ENST00000565236 WDR82Q6UXN9 313 aa18.63■□□□□ 0.57
CLN3-215ENST00000565236 KRT77Q7Z794 578 aa18.63■□□□□ 0.57
CLN3-215ENST00000565236 ITPKCQ96DU7 683 aa18.63■□□□□ 0.57
CLN3-215ENST00000565236 NRBF2Q96F24 287 aa18.63■□□□□ 0.57
CLN3-215ENST00000565236 WDFY2Q96P53 400 aa18.63■□□□□ 0.57
CLN3-215ENST00000565236 RTL8AQ9BWD3 113 aa18.63■□□□□ 0.57
CLN3-215ENST00000565236 PAPOLBQ9NRJ5 636 aaKnown RBP18.63■□□□□ 0.57
CLN3-215ENST00000565236 PCDHGB1Q9Y5G3 927 aa18.63■□□□□ 0.57
CLN3-215ENST00000565236 MDFIC2A0A1B0GVS7 189 aa18.62■□□□□ 0.57
CLN3-215ENST00000565236 ZNF850A8MQ14 1090 aa18.62■□□□□ 0.57
CLN3-215ENST00000565236 CDIPTO14735 213 aa18.62■□□□□ 0.57
CLN3-215ENST00000565236 ALOX5APP20292 161 aa18.62■□□□□ 0.57
CLN3-215ENST00000565236 SLC2A5P22732 501 aa18.62■□□□□ 0.57
CLN3-215ENST00000565236 HCCSP53701 268 aa18.62■□□□□ 0.57
CLN3-215ENST00000565236 CRISP1P54107 249 aa18.62■□□□□ 0.57
CLN3-215ENST00000565236 PSMA6P60900 246 aaKnown RBP18.62■□□□□ 0.57
CLN3-215ENST00000565236 PRDX4Q13162 271 aa18.62■□□□□ 0.57
CLN3-215ENST00000565236 DEFB112Q30KQ8 113 aa18.62■□□□□ 0.57
CLN3-215ENST00000565236 C11orf91Q3C1V1 193 aa18.62■□□□□ 0.57
CLN3-215ENST00000565236 METTL11BQ5VVY1 283 aa18.62■□□□□ 0.57
CLN3-215ENST00000565236 BTN2A1Q7KYR7 527 aa18.62■□□□□ 0.57
CLN3-215ENST00000565236 ST8SIA4Q92187 359 aa18.62■□□□□ 0.57
CLN3-215ENST00000565236 PIGCQ92535 297 aa18.62■□□□□ 0.57
CLN3-215ENST00000565236 CCL13Q99616 98 aa18.62■□□□□ 0.57
CLN3-215ENST00000565236 YIPF3Q9GZM5 350 aa18.62■□□□□ 0.57
CLN3-215ENST00000565236 ABCB9Q9NP78 766 aa18.62■□□□□ 0.57
CLN3-215ENST00000565236 ZNF391Q9UJN7 358 aa18.62■□□□□ 0.57
CLN3-215ENST00000565236 LRP12Q9Y561 859 aa18.62■□□□□ 0.57
CLN3-215ENST00000565236 ACKR3P25106 362 aa18.61■□□□□ 0.57
CLN3-215ENST00000565236 KCTD18Q6PI47 426 aaPredicted RBP18.61■□□□□ 0.57
CLN3-215ENST00000565236 OR8B12Q8NGG6 310 aa18.61■□□□□ 0.57
CLN3-215ENST00000565236 TEAD3Q99594 435 aa18.61■□□□□ 0.57
CLN3-215ENST00000565236 ZNF747Q9BV97 191 aa18.61■□□□□ 0.57
CLN3-215ENST00000565236 TLNRD1Q9H1K6 362 aa18.61■□□□□ 0.57
CLN3-215ENST00000565236 FAM53CQ9NYF3 392 aa18.61■□□□□ 0.57
CLN3-215ENST00000565236 GSC2O15499 205 aa18.6■□□□□ 0.57
CLN3-215ENST00000565236 HOXA3O43365 443 aaPredicted RBP18.6■□□□□ 0.57
CLN3-215ENST00000565236 CST4P01036 141 aa18.6■□□□□ 0.57
CLN3-215ENST00000565236 MMP9P14780 707 aa18.6■□□□□ 0.57
CLN3-215ENST00000565236 ARF6P62330 175 aa18.6■□□□□ 0.57
CLN3-215ENST00000565236 WDR38Q5JTN6 314 aa18.6■□□□□ 0.57
CLN3-215ENST00000565236 LCN1P1Q5VSP4 162 aa18.6■□□□□ 0.57
CLN3-215ENST00000565236 C16orf87Q6PH81 154 aa18.6■□□□□ 0.57
CLN3-215ENST00000565236 KCTD8Q6ZWB6 473 aa18.6■□□□□ 0.57
CLN3-215ENST00000565236 SLC36A1Q7Z2H8 476 aa18.6■□□□□ 0.57
CLN3-215ENST00000565236 OR5P3Q8WZ94 311 aa18.6■□□□□ 0.57
CLN3-215ENST00000565236 C12orf43Q96C57 262 aaKnown RBP18.6■□□□□ 0.57
CLN3-215ENST00000565236 RNF170Q96K19 258 aa18.6■□□□□ 0.57
CLN3-215ENST00000565236 LYZL4Q96KX0 146 aa18.6■□□□□ 0.57
CLN3-215ENST00000565236 HIST1H2AAQ96QV6 131 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms