RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.31■□□□□ 0.04
CLN3-214ENST00000565140 CSNK2A3Q8NEV1 391 aa15.31■□□□□ 0.04
CLN3-214ENST00000565140 OR1M1Q8NGA1 313 aa15.31■□□□□ 0.04
CLN3-214ENST00000565140 TMEM163Q8TC26 289 aa15.31■□□□□ 0.04
CLN3-214ENST00000565140 RAB40AQ8WXH6 277 aa15.31■□□□□ 0.04
CLN3-214ENST00000565140 CENPNQ96H22 339 aaPredicted RBP15.31■□□□□ 0.04
CLN3-214ENST00000565140 IL4I1Q96RQ9 567 aa15.31■□□□□ 0.04
CLN3-214ENST00000565140 MRI1Q9BV20 369 aa15.31■□□□□ 0.04
CLN3-214ENST00000565140 PAPOLGQ9BWT3 736 aaKnown RBP15.31■□□□□ 0.04
CLN3-214ENST00000565140 CTSZQ9UBR2 303 aa15.31■□□□□ 0.04
CLN3-214ENST00000565140 CLN8Q9UBY8 286 aa15.31■□□□□ 0.04
CLN3-214ENST00000565140 OAZ3Q9UMX2 235 aa15.31■□□□□ 0.04
CLN3-214ENST00000565140 IGHV2-70DA0A0C4DH43 119 aa15.3■□□□□ 0.04
CLN3-214ENST00000565140 KIR2DS1A0A191URI9 304 aa15.3■□□□□ 0.04
CLN3-214ENST00000565140 hCG_1807616A0A1W2PRN6 198 aa15.3■□□□□ 0.04
CLN3-214ENST00000565140 OOEPA6NGQ2 149 aa15.3■□□□□ 0.04
CLN3-214ENST00000565140 CSNK2BP67870 215 aa15.3■□□□□ 0.04
CLN3-214ENST00000565140 ROM1Q03395 351 aa15.3■□□□□ 0.04
CLN3-214ENST00000565140 ARMCX4Q5H9R4 360 aa15.3■□□□□ 0.04
CLN3-214ENST00000565140 NXNL2Q5VZ03 156 aa15.3■□□□□ 0.04
CLN3-214ENST00000565140 KCTD18Q6PI47 426 aaPredicted RBP15.3■□□□□ 0.04
CLN3-214ENST00000565140 FAM90A1Q86YD7 464 aa15.3■□□□□ 0.04
CLN3-214ENST00000565140 BPIFB2Q8N4F0 458 aa15.3■□□□□ 0.04
CLN3-214ENST00000565140 PYDC1Q8WXC3 89 aa15.3■□□□□ 0.04
CLN3-214ENST00000565140 PPP1R14AQ96A00 147 aa15.3■□□□□ 0.04
CLN3-214ENST00000565140 ITPKCQ96DU7 683 aa15.3■□□□□ 0.04
CLN3-214ENST00000565140 OR8B4Q96RC9 309 aa15.3■□□□□ 0.04
CLN3-214ENST00000565140 CNN2Q99439 309 aaKnown RBP15.3■□□□□ 0.04
CLN3-214ENST00000565140 MROQ9BYG7 248 aa15.3■□□□□ 0.04
CLN3-214ENST00000565140 PRRG3Q9BZD7 231 aa15.3■□□□□ 0.04
CLN3-214ENST00000565140 ESM1Q9NQ30 184 aa15.3■□□□□ 0.04
CLN3-214ENST00000565140 FAM206AQ9NX38 181 aa15.3■□□□□ 0.04
CLN3-214ENST00000565140 ZNF69Q9UC07 566 aa15.3■□□□□ 0.04
CLN3-214ENST00000565140 NUP50Q9UKX7 468 aa15.3■□□□□ 0.04
CLN3-214ENST00000565140 IGHV3OR15-7A0A075B7D8 119 aa15.29■□□□□ 0.04
CLN3-214ENST00000565140 TMEM269A0A1B0GVZ9 245 aa15.29■□□□□ 0.04
CLN3-214ENST00000565140 ZNF850A8MQ14 1090 aa15.29■□□□□ 0.04
CLN3-214ENST00000565140 PHYHO14832 338 aa15.29■□□□□ 0.04
CLN3-214ENST00000565140 MAGEB4O15481 346 aaPredicted RBP15.29■□□□□ 0.04
CLN3-214ENST00000565140 FCN3O75636 299 aa15.29■□□□□ 0.04
CLN3-214ENST00000565140 GYPAP02724 150 aa15.29■□□□□ 0.04
CLN3-214ENST00000565140 GNALP38405 381 aa15.29■□□□□ 0.04
CLN3-214ENST00000565140 PRDX4Q13162 271 aa15.29■□□□□ 0.04
CLN3-214ENST00000565140 TUSC1Q2TAM9 212 aa15.29■□□□□ 0.04
CLN3-214ENST00000565140 BTNL3Q6UXE8 466 aa15.29■□□□□ 0.04
CLN3-214ENST00000565140 WDR82Q6UXN9 313 aa15.29■□□□□ 0.04
CLN3-214ENST00000565140 ZNF679Q8IYX0 411 aa15.29■□□□□ 0.04
CLN3-214ENST00000565140 BCL6BQ8N143 479 aaPredicted RBP15.29■□□□□ 0.04
CLN3-214ENST00000565140 GALNT4Q8N4A0 578 aa15.29■□□□□ 0.04
CLN3-214ENST00000565140 LRRC29Q8WV35 223 aa15.29■□□□□ 0.04
CLN3-214ENST00000565140 OR5P3Q8WZ94 311 aa15.29■□□□□ 0.04
CLN3-214ENST00000565140 NUDT16L1Q9BRJ7 211 aaKnown RBP15.29■□□□□ 0.04
CLN3-214ENST00000565140 SUCNR1Q9BXA5 334 aa15.29■□□□□ 0.04
CLN3-214ENST00000565140 FGF23Q9GZV9 251 aaPredicted RBP15.29■□□□□ 0.04
CLN3-214ENST00000565140 RASSF4Q9H2L5 321 aa15.29■□□□□ 0.04
CLN3-214ENST00000565140 ADGRL4Q9HBW9 690 aa15.29■□□□□ 0.04
CLN3-214ENST00000565140 H2AFY2Q9P0M6 372 aaPredicted RBP15.29■□□□□ 0.04
CLN3-214ENST00000565140 TRAV38-1A0A0B4J264 116 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 ACOD1A6NK06 481 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 SAC3D1A6NKF1 404 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 C22orf46C9J442 243 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 ADAM20O43506 726 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 ZNF254O75437 659 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 CST4P01036 141 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 IGHV4-38-2P0DP08 117 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 FPR2P25090 351 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 ELF3P78545 371 aaPredicted RBP15.28■□□□□ 0.04
CLN3-214ENST00000565140 KCNJ8Q15842 424 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 SLC35F2Q8IXU6 374 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 ZFAND2BQ8WV99 257 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 ASB17Q8WXJ9 295 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 PIGCQ92535 297 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 SEH1LQ96EE3 360 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 APOL4Q9BPW4 351 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 MICU1Q9BPX6 476 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 OSBPL10Q9BXB5 764 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 PBOV1Q9GZY1 135 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 TLNRD1Q9H1K6 362 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 RNPEPL1Q9HAU8 725 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 SMURF1Q9HCE7 757 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 MPC1Q9Y5U8 109 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 TMEM14AQ9Y6G1 99 aa15.28■□□□□ 0.04
CLN3-214ENST00000565140 IGHV3OR16-10A0A075B7F0 116 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 A0A0U1RQV5 110 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 SLC22A31A6NKX4 558 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 ANXA2P2A6NMY6 339 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.27■□□□□ 0.04
CLN3-214ENST00000565140 CDIPTO14735 213 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 SRSF10O75494 262 aaKnown RBP15.27■□□□□ 0.04
CLN3-214ENST00000565140 DCTDP32321 178 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 CXCR4P61073 352 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 ACTR3P61158 418 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 IL5RAQ01344 420 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 MFGE8Q08431 387 aaPredicted RBP15.27■□□□□ 0.04
CLN3-214ENST00000565140 KPNB1Q14974 876 aaKnown RBP15.27■□□□□ 0.04
CLN3-214ENST00000565140 SNCBQ16143 134 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 TEX36Q5VZQ5 186 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 ZNF322Q6U7Q0 402 aaPredicted RBP15.27■□□□□ 0.04
CLN3-214ENST00000565140 FTMTQ8N4E7 242 aa15.27■□□□□ 0.04
CLN3-214ENST00000565140 ZDHHC22Q8N966 263 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms