RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 F5H0A9 414 aaPredicted RBP11.24□□□□□ -0.61
CLK3-216ENST00000564468 PSMD9O00233 223 aa11.24□□□□□ -0.61
CLK3-216ENST00000564468 MPZL2O60487 215 aa11.24□□□□□ -0.61
CLK3-216ENST00000564468 MTRF1O75570 445 aaKnown RBP11.24□□□□□ -0.61
CLK3-216ENST00000564468 BAG2O95816 211 aa11.24□□□□□ -0.61
CLK3-216ENST00000564468 CST4P01036 141 aa11.24□□□□□ -0.61
CLK3-216ENST00000564468 KRT8P05787 483 aa11.24□□□□□ -0.61
CLK3-216ENST00000564468 GRPP07492 148 aa11.24□□□□□ -0.61
CLK3-216ENST00000564468 PMELP40967 661 aa11.24□□□□□ -0.61
CLK3-216ENST00000564468 SNRPGP62308 76 aaKnown RBP11.24□□□□□ -0.61
CLK3-216ENST00000564468 MPPED2Q15777 294 aa11.24□□□□□ -0.61
CLK3-216ENST00000564468 ZIK1Q3SY52 487 aaPredicted RBP11.24□□□□□ -0.61
CLK3-216ENST00000564468 ZNF404Q494X3 552 aa11.24□□□□□ -0.61
CLK3-216ENST00000564468 SLC25A30Q5SVS4 291 aa11.24□□□□□ -0.61
CLK3-216ENST00000564468 IL17RELQ6ZVW7 336 aa11.24□□□□□ -0.61
CLK3-216ENST00000564468 ZNF771Q7L3S4 317 aaPredicted RBP11.24□□□□□ -0.61
CLK3-216ENST00000564468 COMMD2Q86X83 199 aa11.24□□□□□ -0.61
CLK3-216ENST00000564468 NEIL1Q96FI4 390 aaPredicted RBP11.24□□□□□ -0.61
CLK3-216ENST00000564468 HIST1H2AAQ96QV6 131 aa11.24□□□□□ -0.61
CLK3-216ENST00000564468 MYCBPQ99417 103 aaPredicted RBP11.24□□□□□ -0.61
CLK3-216ENST00000564468 RTL8AQ9BWD3 113 aa11.24□□□□□ -0.61
CLK3-216ENST00000564468 PBOV1Q9GZY1 135 aa11.24□□□□□ -0.61
CLK3-216ENST00000564468 RNPEPL1Q9HAU8 725 aa11.24□□□□□ -0.61
CLK3-216ENST00000564468 G6PC2Q9NQR9 355 aa11.24□□□□□ -0.61
CLK3-216ENST00000564468 NUFIP1Q9UHK0 495 aaKnown RBP11.24□□□□□ -0.61
CLK3-216ENST00000564468 POLR3KQ9Y2Y1 108 aaPredicted RBP11.24□□□□□ -0.61
CLK3-216ENST00000564468 TRAV38-1A0A0B4J264 116 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 ZNF816-ZNF321PA0A0X1KG74 233 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 hCG_1807616A0A1W2PRN6 198 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 TMEM210A6NLX4 147 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 A8MXK9 166 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 LOC110117498-PIK3R3F6TDL0 507 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 HAX1O00165 279 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 PHF1O43189 567 aaPredicted RBP11.23□□□□□ -0.61
CLK3-216ENST00000564468 NDUFA2O43678 99 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 WNT2P09544 360 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 RPS2P15880 293 aaKnown RBP11.23□□□□□ -0.61
CLK3-216ENST00000564468 LCN2P80188 198 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 OCLNQ16625 522 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 ZSCAN26Q16670 478 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 DCDC5Q6ZRR9 648 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 THAP5Q7Z6K1 395 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 GALNT4Q8N4A0 578 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 OR8B3Q8NGG8 313 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 DVL3Q92997 716 aaPredicted RBP11.23□□□□□ -0.61
CLK3-216ENST00000564468 OR8B2Q96RD0 313 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 APOL4Q9BPW4 351 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 TMEM246Q9BRR3 403 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 TTTY10Q9BZA0 68 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 C1orf123Q9NWV4 160 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 OR5V1Q9UGF6 321 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 METRNQ9UJH8 293 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 GTF2A1LQ9UNN4 478 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 RHBDD3Q9Y3P4 386 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 PCDHGB1Q9Y5G3 927 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 GMPPBQ9Y5P6 360 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 SNX5Q9Y5X3 404 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 R4GMQ9 66 aa11.23□□□□□ -0.61
CLK3-216ENST00000564468 CUBNO60494 3623 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 LGALS8O00214 317 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 SULT1C4O75897 302 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 ZNF205O95201 554 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 MTNR1AP48039 350 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 GNB2P62879 340 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 ACTC1P68032 377 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 ACTA1P68133 377 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 RIPPLY1Q0D2K3 151 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 PRDX4Q13162 271 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 BCL2L15Q5TBC7 163 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 ZBTB37Q5TC79 503 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 PLEKHG7Q6ZR37 379 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 KRT74Q7RTS7 529 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 ZDHHC23Q8IYP9 409 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 YIPF7Q8N8F6 280 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 SEMA6DQ8NFY4 1073 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 OR1M1Q8NGA1 313 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 OR10H4Q8NGA5 316 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 PIGCQ92535 297 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 LYZL4Q96KX0 146 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 Q96MT0 163 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 RDH12Q96NR8 316 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 TBX5Q99593 518 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 SSBP3Q9BWW4 388 aaPredicted RBP11.22□□□□□ -0.61
CLK3-216ENST00000564468 GPR84Q9NQS5 396 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 C8orf4Q9NR00 106 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 OR52A1Q9UKL2 312 aa11.22□□□□□ -0.61
CLK3-216ENST00000564468 A0A1W2PQL4 384 aaPredicted RBP11.21□□□□□ -0.61
CLK3-216ENST00000564468 METTL15A6NJ78 407 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 ZNF850A8MQ14 1090 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 PRR32B1ATL7 298 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 E9PQ18 207 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 DHRS3O75911 302 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 IGLV3-1P01715 115 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 ACKR3P25106 362 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 NPY4RP50391 375 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 HNRNPA0Q13151 305 aaKnown RBP11.21□□□□□ -0.61
CLK3-216ENST00000564468 FAM201AQ5SY85 155 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 KCTD8Q6ZWB6 473 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 FAM220AQ7Z4H9 259 aa11.21□□□□□ -0.61
CLK3-216ENST00000564468 KCTD20Q7Z5Y7 419 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms