RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 EDEM2Q9BV94 578 aa11.89□□□□□ -0.51
CLK3-215ENST00000564353 TMEM59Q9BXS4 323 aa11.89□□□□□ -0.51
CLK3-215ENST00000564353 ZNF701Q9NV72 531 aaPredicted RBP11.89□□□□□ -0.51
CLK3-215ENST00000564353 FGF2P09038 288 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 GLRA1P23415 457 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 MPPED2Q15777 294 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 PLXDC2Q6UX71 529 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 Q7L0L9 218 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 OR2M3Q8NG83 312 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 OR2AE1Q8NHA4 323 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 THAP6Q8TBB0 222 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 PGAM5Q96HS1 289 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 MYO7BQ6PIF6 2116 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 CACNA1EQ15878 2313 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 PATE3B3GLJ2 98 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 ZNF208O43345 1280 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 F12P00748 615 aaPredicted RBP11.88□□□□□ -0.51
CLK3-215ENST00000564353 CFIP05156 583 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 MGMTP16455 207 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 GABRR1P24046 479 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 MEF2DQ14814 521 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 PPP1R3BQ86XI6 285 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 C20orf196Q8IYI0 205 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 BPIFCQ8NFQ6 507 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 NUBPLQ8TB37 319 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 PAQR8Q8TEZ7 354 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 RRNAD1Q96FB5 475 aaKnown RBP11.88□□□□□ -0.51
CLK3-215ENST00000564353 SHARPINQ9H0F6 387 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 HPF1Q9NWY4 346 aa11.88□□□□□ -0.51
CLK3-215ENST00000564353 MSGN1A6NI15 193 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 FAM74A7A6NL05 159 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 TTLL8A6PVC2 850 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 ANGPTL7O43827 346 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 BPNT1O95861 308 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 HOXB5P09067 269 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 CCL3P10147 92 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 CCL4P13236 92 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 SPINK2P20155 84 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 FAM74A3Q4VXF1 159 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 RAB12Q6IQ22 244 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 NAXDQ8IW45 347 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 INO80EQ8NBZ0 244 aaPredicted RBP11.87□□□□□ -0.51
CLK3-215ENST00000564353 OR1S2Q8NGQ3 325 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 FOXRED1Q96CU9 486 aaPredicted RBP11.87□□□□□ -0.51
CLK3-215ENST00000564353 SPACA9Q96E40 222 aaPredicted RBP11.87□□□□□ -0.51
CLK3-215ENST00000564353 LYZL4Q96KX0 146 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 MRGPRX4Q96LA9 322 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 SLCO5A1Q9H2Y9 848 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 C5orf66Q9H5L9 145 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 LOC400499M0QZD8 3231 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 TRBV23-1A0A0A0MS06 115 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 TMEM14DPA8MWL7 114 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 AMY2BP19961 511 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 SRSF3P84103 164 aaKnown RBP11.87□□□□□ -0.51
CLK3-215ENST00000564353 ACY1Q03154 408 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 SSBP1Q04837 148 aaKnown RBP11.87□□□□□ -0.51
CLK3-215ENST00000564353 TMEM88Q6PEY1 159 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 DEGS2Q6QHC5 323 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 C5orf46Q6UWT4 87 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 RABEPKQ7Z6M1 372 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 PNLDC1Q8NA58 520 aaKnown RBP11.87□□□□□ -0.51
CLK3-215ENST00000564353 OR5L2Q8NGL0 311 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 OR51F2Q8NH61 342 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 MITD1Q8WV92 249 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 DYRK2Q92630 601 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 C1orf147Q96MC9 270 aaPredicted RBP11.87□□□□□ -0.51
CLK3-215ENST00000564353 TGIF2Q9GZN2 237 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 ZNF160Q9HCG1 818 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 CHMP1AQ9HD42 196 aaPredicted RBP11.87□□□□□ -0.51
CLK3-215ENST00000564353 PNRC2Q9NPJ4 139 aaKnown RBP11.87□□□□□ -0.51
CLK3-215ENST00000564353 MRPS17Q9Y2R5 130 aaKnown RBP11.87□□□□□ -0.51
CLK3-215ENST00000564353 IGKV1D-8A0A087WSZ0 117 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 FAM221AA4D161 298 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 CXCL12P48061 93 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 CLEC9AQ6UXN8 241 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 KCNRGQ8N5I3 272 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 TMED6Q8WW62 240 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 LRRC46Q96FV0 321 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 PRO3102Q9H379 93 aa11.87□□□□□ -0.51
CLK3-215ENST00000564353 NCOA6Q14686 2063 aaPredicted RBP11.86□□□□□ -0.51
CLK3-215ENST00000564353 LY6G6EA0A0G2JKS1 128 aa11.86□□□□□ -0.51
CLK3-215ENST00000564353 H0YIZ8 118 aa11.86□□□□□ -0.51
CLK3-215ENST00000564353 BCL2L11O43521 198 aa11.86□□□□□ -0.51
CLK3-215ENST00000564353 CD8AP01732 235 aa11.86□□□□□ -0.51
CLK3-215ENST00000564353 FCGR2AP12318 317 aa11.86□□□□□ -0.51
CLK3-215ENST00000564353 HIST1H1DP16402 221 aaKnown RBP11.86□□□□□ -0.51
CLK3-215ENST00000564353 RAB6AP20340 208 aa11.86□□□□□ -0.51
CLK3-215ENST00000564353 BLVRBP30043 206 aaPredicted RBP11.86□□□□□ -0.51
CLK3-215ENST00000564353 S100A10P60903 97 aa11.86□□□□□ -0.51
CLK3-215ENST00000564353 CSNK2A1P68400 391 aaPredicted RBP11.86□□□□□ -0.51
CLK3-215ENST00000564353 ZNF468Q5VIY5 522 aaPredicted RBP11.86□□□□□ -0.51
CLK3-215ENST00000564353 C6orf201Q7Z4U5 140 aa11.86□□□□□ -0.51
CLK3-215ENST00000564353 ARL6IP6Q8N6S5 226 aa11.86□□□□□ -0.51
CLK3-215ENST00000564353 CSNK2A3Q8NEV1 391 aa11.86□□□□□ -0.51
CLK3-215ENST00000564353 TMEM230Q96A57 120 aa11.86□□□□□ -0.51
CLK3-215ENST00000564353 RASL12Q9NYN1 266 aa11.86□□□□□ -0.51
CLK3-215ENST00000564353 OR5AC2Q9NZP5 309 aa11.86□□□□□ -0.51
CLK3-215ENST00000564353 PCDHB10Q9UN67 800 aa11.86□□□□□ -0.51
CLK3-215ENST00000564353 U3KQA8 63 aa11.86□□□□□ -0.51
CLK3-215ENST00000564353 APOC1P02654 83 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms