RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 SULT1A1P50225 295 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 SULT1A2P50226 295 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 EFNA5P52803 228 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 CRISP1P54107 249 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 AQP4P55087 323 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 PAX9P55771 341 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 TCL1AP56279 114 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 CLDN12P56749 244 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 TMPRSS3P57727 454 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 SELENOWP63302 87 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 NTHL1P78549 312 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 CDK6Q00534 326 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 DEFA5Q01523 94 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 IFITM3Q01628 133 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 TCP10Q12799 353 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 NME3Q13232 169 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 FGFBP1Q14512 234 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 PEA15Q15121 130 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 OR1Q1Q15612 314 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 ZIC1Q15915 447 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 HIST2H2ACQ16777 129 aaPredicted RBP4.41□□□□□ -1.7
VPS35-205ENST00000563984 TTLL9Q3SXZ7 439 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 TMEM97Q5BJF2 176 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 LIPKQ5VXJ0 399 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 CD164L2Q6UWJ8 174 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 GLT6D1Q7Z4J2 308 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 GOLGA7Q7Z5G4 137 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 TBC1D26Q86UD7 250 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 FGFRL1Q8N441 504 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 IQCF1Q8N6M8 205 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 ZNF439Q8NDP4 499 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 OR9I1Q8NGQ6 314 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 OR13C8Q8NGS7 320 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 LYPD6BQ8NI32 183 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 FAM110BQ8TC76 370 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 Q8WTZ3 238 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 IL22RA2Q969J5 263 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 ARL11Q969Q4 196 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 HIST1H2BAQ96A08 127 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 CENPNQ96H22 339 aaPredicted RBP4.41□□□□□ -1.7
VPS35-205ENST00000563984 ZC3HAV1LQ96H79 300 aaKnown RBP4.41□□□□□ -1.7
VPS35-205ENST00000563984 ZNF419Q96HQ0 510 aaPredicted RBP4.41□□□□□ -1.7
VPS35-205ENST00000563984 ADGRG7Q96K78 797 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 MS4A10Q96PG2 267 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 FMO2Q99518 471 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 GINS4Q9BRT9 223 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 ZNF649Q9BS31 505 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 LXNQ9BS40 222 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 TRIM51Q9BSJ1 452 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 TM6SF1Q9BZW5 370 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 OR11A1Q9GZK7 315 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 CHRNA10Q9GZZ6 450 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 NXF5Q9H1B4 397 aaKnown RBP4.41□□□□□ -1.7
VPS35-205ENST00000563984 PRO1933Q9H354 126 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 KIAA1456Q9P272 454 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 RAB22AQ9UL26 194 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 SIGLEC9Q9Y336 463 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 EXOSC1Q9Y3B2 195 aaKnown RBP4.41□□□□□ -1.7
VPS35-205ENST00000563984 ZCCHC11Q5TAX3 1644 aaKnown RBP4.41□□□□□ -1.7
VPS35-205ENST00000563984 MYH10P35580 1976 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 NOTCH4Q99466 2003 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 NFASCO94856 1347 aa4.41□□□□□ -1.7
VPS35-205ENST00000563984 ATP10DQ9P241 1426 aa4.4□□□□□ -1.7
VPS35-205ENST00000563984 TRBV5-7A0A0A0MS05 114 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 A0A0G2JN53 185 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 KIR2DS1A0A191URI9 304 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 TMEM150BA6NC51 233 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 ANTXRLA6NF34 631 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 D6RAR5 112 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 J3QLI3 93 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 IFNL4K9M1U5 179 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 M0QZ24 198 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 DVL1O14640 695 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 PTGESO14684 152 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 ACOT8O14734 319 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 SYT7O43581 403 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 CLDN7O95471 211 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 TIMP1P01033 207 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 CRYAAP02489 173 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 NGFRP08138 427 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 UBBP0CG47 229 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 PPIAL4GP0DN37 164 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 RCC1P18754 421 aaPredicted RBP4.4□□□□□ -1.71
VPS35-205ENST00000563984 PRPH2P23942 346 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 HTR1EP28566 365 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 CHRNB4P30926 498 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 NTSP30990 170 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 LBX1P52954 281 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 ZXDBP98169 803 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 FKBP3Q00688 224 aaKnown RBP4.4□□□□□ -1.71
VPS35-205ENST00000563984 CAV1Q03135 178 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 MFGE8Q08431 387 aaPredicted RBP4.4□□□□□ -1.71
VPS35-205ENST00000563984 ZNF415Q09FC8 603 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 ZNF763Q0D2J5 394 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 CDH18Q13634 790 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 EXOSC2Q13868 293 aaKnown RBP4.4□□□□□ -1.71
VPS35-205ENST00000563984 EDDM3AQ14507 147 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 KIR2DS1Q14954 304 aa4.4□□□□□ -1.71
VPS35-205ENST00000563984 MAD2L1BPQ15013 274 aaPredicted RBP4.4□□□□□ -1.71
VPS35-205ENST00000563984 EBPQ15125 230 aaKnown RBP4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms