RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 S100PBPQ96BU1 408 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 DERL3Q96Q80 235 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 ADGRL4Q9HBW9 690 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 NOX3Q9HBY0 568 aa8.13□□□□□ -1.11
VPS39-205ENST00000562258 TRIOO75962 3097 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 IGKV1D-42A0A075B6H8 117 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 K7ENP7 123 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 CDIPTO14735 213 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 DNPH1O43598 174 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 GPX5O75715 221 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 TOXO94900 526 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 OPRL1P41146 370 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 SRP9P49458 86 aaKnown RBP8.12□□□□□ -1.11
VPS39-205ENST00000562258 ZNF81P51508 661 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 MICBQ29980 383 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 CCDC92Q53HC0 331 aaPredicted RBP8.12□□□□□ -1.11
VPS39-205ENST00000562258 CLVS2Q5SYC1 327 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 INO80CQ6PI98 192 aaPredicted RBP8.12□□□□□ -1.11
VPS39-205ENST00000562258 LAX1Q8IWV1 398 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 PDZD9Q8IXQ8 264 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 C9orf106Q8NAJ2 232 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 SLAMF9Q96A28 289 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 SAP30LQ9HAJ7 183 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 STARD10Q9Y365 291 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 ALPK3Q96L96 1907 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 hCG_1809904A0A1W2PP81 198 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 A0A1W2PPE2 198 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 A0A1W2PR64 198 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 A0A1W2PRV1 198 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 TMEM235A6NFC5 223 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 DDOSTP39656 456 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 MRPS34P82930 218 aaKnown RBP8.12□□□□□ -1.11
VPS39-205ENST00000562258 CMPK2Q5EBM0 449 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 RAB12Q6IQ22 244 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 CMTM1Q8IZ96 169 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 OR6K3Q8NGY3 331 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 OR2H1Q9GZK4 316 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 CHST6Q9GZX3 395 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 RAB1BQ9H0U4 201 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 PKD1L2Q7Z442 2459 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 A8MV72 311 aaPredicted RBP8.12□□□□□ -1.11
VPS39-205ENST00000562258 MRPS14O60783 128 aaKnown RBP8.12□□□□□ -1.11
VPS39-205ENST00000562258 HOXD4P09016 255 aaPredicted RBP8.12□□□□□ -1.11
VPS39-205ENST00000562258 GNG3P63215 75 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 PSG4Q00888 419 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 CD83Q01151 205 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 PLA1AQ53H76 456 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 KHDC1LQ5JSQ8 128 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 NAA40Q86UY6 237 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 NARS2Q96I59 477 aaKnown RBP8.12□□□□□ -1.11
VPS39-205ENST00000562258 GPR137Q96N19 417 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 OR2B2Q9GZK3 357 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 TINAGL1Q9GZM7 467 aaPredicted RBP8.12□□□□□ -1.11
VPS39-205ENST00000562258 MOB1AQ9H8S9 216 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 TNFRSF19Q9NS68 423 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 SEMA5BQ9P283 1151 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 FAM96BQ9Y3D0 163 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 SESN1Q9Y6P5 492 aa8.12□□□□□ -1.11
VPS39-205ENST00000562258 HEATR5AQ86XA9 2040 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 TRAF3IP2O43734 574 aaPredicted RBP8.11□□□□□ -1.11
VPS39-205ENST00000562258 ANXA3P12429 323 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 CD79BP40259 229 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 PRDX4Q13162 271 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 PYHIN1Q6K0P9 492 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 TPRA1Q86W33 373 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 POC1BQ8TC44 478 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 BCO1Q9HAY6 547 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 C1orf123Q9NWV4 160 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 KIAA1671Q9BY89 1806 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 TRDV1A0A1B0GX56 115 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 NPIPB9F8W1W9 429 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 LGALS8O00214 317 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 ADAM20O43506 726 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 ZNF780AO75290 641 aaPredicted RBP8.11□□□□□ -1.11
VPS39-205ENST00000562258 IL1AP01583 271 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 LYPD8Q6UX82 237 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 OR8B12Q8NGG6 310 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 LRRC29Q8WV35 223 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 RAB39BQ96DA2 213 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 ZNF837Q96EG3 531 aaPredicted RBP8.11□□□□□ -1.11
VPS39-205ENST00000562258 ZNF45Q02386 682 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 TNK1Q13470 666 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 SYT6Q5T7P8 510 aaPredicted RBP8.11□□□□□ -1.11
VPS39-205ENST00000562258 MOGAT3Q86VF5 341 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 CCDC36Q8IYA8 594 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 SLC26A10Q8NG04 563 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 CDCA4Q9BXL8 241 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 ZNF286AQ9HBT8 521 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 ZNF355PQ9NSJ1 428 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 PLCXD1Q9NUJ7 323 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 STEAP1Q9UHE8 339 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 MRM2Q9UI43 246 aaKnown RBP8.11□□□□□ -1.11
VPS39-205ENST00000562258 HIVEP2P31629 2446 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 MTORP42345 2549 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 FXYD6-FXYD2A0A087WZ82 144 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 FUOMA2VDF0 154 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 OR14I1A6ND48 311 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 SDCBPO00560 298 aaPredicted RBP8.11□□□□□ -1.11
VPS39-205ENST00000562258 MSTNO14793 375 aa8.11□□□□□ -1.11
VPS39-205ENST00000562258 SH2D1BO14796 132 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms