RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 TMEM235A6NFC5 223 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 CYTIPO60759 359 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 RBBP9O75884 186 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 SLC25A1P53007 311 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 PSMA6P60900 246 aaKnown RBP4.76□□□□□ -1.65
VPS13C-209ENST00000560637 SNAI3Q3KNW1 292 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 LRRC37A5PQ49AS3 106 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 ABCA11PQ4W5N1 156 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 FAAP20Q6NZ36 180 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 CD300LDQ6UXZ3 194 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 KCTD9Q7L273 389 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 EGFL6Q8IUX8 553 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 GALNT11Q8NCW6 608 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 OR1M1Q8NGA1 313 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 OR52N4Q8NGI2 321 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 OR52H1Q8NGJ2 320 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 FAM57AQ8TBR7 257 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 FAM3DQ96BQ1 224 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 CPNE2Q96FN4 548 aaPredicted RBP4.76□□□□□ -1.65
VPS13C-209ENST00000560637 MAP6Q96JE9 813 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 JAM3Q9BX67 310 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 ACKR4Q9NPB9 350 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 TRAPPC2LQ9UL33 140 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 UGT2A1Q9Y4X1 527 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 PCDHGA9Q9Y5G4 932 aaKnown RBP4.76□□□□□ -1.65
VPS13C-209ENST00000560637 LHFPL6Q9Y693 200 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 TP53BP1Q12888 1972 aaPredicted RBP4.75□□□□□ -1.65
VPS13C-209ENST00000560637 IGHV3OR15-7A0A075B7D8 119 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 MEGF11A6BM72 1044 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 TMEM8BA6NDV4 472 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 CD300LBA8K4G0 201 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 RAB27BO00194 218 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 TAF4O00268 1085 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 PTH2RP49190 550 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 ATXN7L3Q14CW9 347 aaPredicted RBP4.75□□□□□ -1.65
VPS13C-209ENST00000560637 SSX1Q16384 188 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 PCGF3Q3KNV8 242 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 PLA1AQ53H76 456 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 PAN3Q58A45 887 aaKnown RBP4.75□□□□□ -1.65
VPS13C-209ENST00000560637 ZDHHC23Q8IYP9 409 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 FBXL14Q8N1E6 418 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 TPRX1Q8N7U7 411 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 RNF128Q8TEB7 428 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 NUDCD2Q8WVJ2 157 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 TECTBQ96PL2 329 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 FUZQ9BT04 418 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 METTL9Q9H1A3 318 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 TMEM100Q9NV29 134 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 IGLV1-36A0A0B4J1U3 117 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 A0A1W2PP11 408 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 F5H5P2 479 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 AMY2AP04746 511 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 NAT2P11245 290 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 IGHV1-2P23083 117 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 TNFSF8P32971 234 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 PPP5CP53041 499 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 GAS1P54826 345 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 KLF3P57682 345 aaPredicted RBP4.75□□□□□ -1.65
VPS13C-209ENST00000560637 HERV-K104P61576 105 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 MRPS34P82930 218 aaKnown RBP4.75□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF92Q03936 586 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 TRAM1Q15629 374 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 YIF1BQ5BJH7 314 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 SYT6Q5T7P8 510 aaPredicted RBP4.75□□□□□ -1.65
VPS13C-209ENST00000560637 RFPL4BQ6ZWI9 263 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 BPIFB2Q8N4F0 458 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF565Q8N9K5 539 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 OR4M1Q8NGD0 313 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF420Q8TAQ5 688 aaPredicted RBP4.75□□□□□ -1.65
VPS13C-209ENST00000560637 S100ZQ8WXG8 99 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 CMSS1Q9BQ75 279 aaKnown RBP4.75□□□□□ -1.65
VPS13C-209ENST00000560637 CDCA4Q9BXL8 241 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 WDR12Q9GZL7 423 aaKnown RBP4.75□□□□□ -1.65
VPS13C-209ENST00000560637 NOX3Q9HBY0 568 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 TNFRSF19Q9NS68 423 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 CISD1Q9NZ45 108 aaKnown RBP4.75□□□□□ -1.65
VPS13C-209ENST00000560637 NLKQ9UBE8 527 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 GNG12Q9UBI6 72 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 KIAA1549LQ6ZVL6 1849 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 MUC22E2RYF6 1773 aaPredicted RBP4.75□□□□□ -1.65
VPS13C-209ENST00000560637 TRAV8-7A0A075B6U6 113 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 C13orf42A0A1B0GVH6 325 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 NOTOA8MTQ0 251 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 SDCBPO00560 298 aaPredicted RBP4.75□□□□□ -1.65
VPS13C-209ENST00000560637 AQP7O14520 342 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 AKR1C4P17516 323 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 IL2RGP31785 369 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 PRSS3P35030 304 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 KIR2DL3P43628 341 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 GFRA1P56159 465 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 SNRPD2P62316 118 aaKnown RBP4.75□□□□□ -1.65
VPS13C-209ENST00000560637 EGR3Q06889 387 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 PRDX4Q13162 271 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 FAM201AQ5SY85 155 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 AVPI1Q5T686 147 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 STAC2Q6ZMT1 411 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 FAM122BQ7Z309 247 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 MOGAT3Q86VF5 341 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 BEST4Q8NFU0 473 aa4.75□□□□□ -1.65
VPS13C-209ENST00000560637 OR11L1Q8NGX0 322 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms