RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-215ENST00000559771 IGLV1-36A0A0B4J1U3 117 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 TRAV40A0A0B4J280 105 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 C5orf63A6NC05 138 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 IQCF6A8MYZ5 107 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 E9PQ18 207 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 HOXA3O43365 443 aaPredicted RBP4.81□□□□□ -1.64
USP3-215ENST00000559771 MPZL2O60487 215 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 SLC16A7O60669 478 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 ZNF682O95780 498 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 HLA-DPB1P04440 258 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 IFNW1P05000 195 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 PSKH1P11801 424 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 MMP9P14780 707 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 TNFSF4P23510 183 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 PSMB10P40306 273 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 OMPP47874 163 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 SMIM11AP58511 58 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 IL13RA1P78552 427 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 KRR1Q13601 381 aaKnown RBP4.81□□□□□ -1.64
USP3-215ENST00000559771 TRAM2Q15035 370 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 SEC23BQ15437 767 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 MPPED2Q15777 294 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 ZNF829Q3KNS6 432 aaPredicted RBP4.81□□□□□ -1.64
USP3-215ENST00000559771 ESCO2Q56NI9 601 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 CLEC12AQ5QGZ9 265 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 RUSC1-AS1Q66K80 236 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 C1orf94Q6P1W5 598 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 C16orf87Q6PH81 154 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 CORO6Q6QEF8 472 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 ARL9Q6T311 187 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 RBMS3Q6XE24 437 aaKnown RBP4.81□□□□□ -1.64
USP3-215ENST00000559771 Q6YL49 198 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 CFAP77Q6ZQR2 320 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 REC114Q7Z4M0 266 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 MOGAT3Q86VF5 341 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 CLVS1Q8IUQ0 354 aaPredicted RBP4.81□□□□□ -1.64
USP3-215ENST00000559771 GLB1L2Q8IW92 636 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 RNF113BQ8IZP6 322 aaKnown RBP4.81□□□□□ -1.64
USP3-215ENST00000559771 SPARTQ8N0X7 666 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 Q8N1X5 172 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 MUC20Q8N307 709 aaPredicted RBP4.81□□□□□ -1.64
USP3-215ENST00000559771 FAM86B1Q8N7N1 296 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 ATG16L2Q8NAA4 619 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 C19orf18Q8NEA5 215 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 OR10S1Q8NGN2 331 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 SLC25A28Q96A46 364 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 C7orf34Q96L11 122 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 MBOAT4Q96T53 435 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 PITX2Q99697 317 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 CITED1Q99966 193 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 MRI1Q9BV20 369 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 FNDC11Q9BVV2 318 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 GABARAPL3Q9BY60 117 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 MS4A7Q9GZW8 240 aaPredicted RBP4.81□□□□□ -1.64
USP3-215ENST00000559771 NUAK2Q9H093 628 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 DUSP21Q9H596 190 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 WDR76Q9H967 626 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 NMNAT1Q9HAN9 279 aaPredicted RBP4.81□□□□□ -1.64
USP3-215ENST00000559771 PLGRKTQ9HBL7 147 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 PNRC2Q9NPJ4 139 aaKnown RBP4.81□□□□□ -1.64
USP3-215ENST00000559771 PLCXD1Q9NUJ7 323 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 C1RLQ9NZP8 487 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 GRHPRQ9UBQ7 328 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 CTSZQ9UBR2 303 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 OR5V1Q9UGF6 321 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 IL20RAQ9UHF4 553 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 ATPIF1Q9UII2 106 aa4.81□□□□□ -1.64
USP3-215ENST00000559771 SAMHD1Q9Y3Z3 626 aaKnown RBP4.81□□□□□ -1.64
USP3-215ENST00000559771 NOTCH1P46531 2555 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 TRBV4-1A0A0J9YWV2 114 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 SRRM5B3KS81 715 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 H3BMQ9 156 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 SLC1A7O00341 560 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 SLC22A1O15245 554 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 SURF4O15260 269 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 KHDRBS3O75525 346 aaKnown RBP4.8□□□□□ -1.64
USP3-215ENST00000559771 NDUFB2O95178 105 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 PPP1R3DO95685 299 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 PTBP3O95758 552 aaKnown RBP4.8□□□□□ -1.64
USP3-215ENST00000559771 TXNDC12O95881 172 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 SFTPBP07988 381 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 MELTFP08582 738 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 ACSM4P0C7M7 580 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 RPS2P15880 293 aaKnown RBP4.8□□□□□ -1.64
USP3-215ENST00000559771 RHCEP18577 417 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 CPT2P23786 658 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 SDHAP31040 664 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 GGT2P36268 569 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 RPL4P36578 427 aaKnown RBP4.8□□□□□ -1.64
USP3-215ENST00000559771 GUCA1AP43080 201 aaPredicted RBP4.8□□□□□ -1.64
USP3-215ENST00000559771 PITPNBP48739 271 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 RGS6P49758 472 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 FGF12P61328 243 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 GNB2P62879 340 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 SLC35A2P78381 396 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 COX10Q12887 443 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 GK2Q14410 553 aaPredicted RBP4.8□□□□□ -1.64
USP3-215ENST00000559771 MIDNQ504T8 468 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 IFI44LQ53G44 452 aa4.8□□□□□ -1.64
USP3-215ENST00000559771 SYT6Q5T7P8 510 aaPredicted RBP4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms