RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 GCDHQ92947 438 aaPredicted RBP11□□□□□ -0.65
USP3-213ENST00000559711 APOBEC3DQ96AK3 386 aaPredicted RBP11□□□□□ -0.65
USP3-213ENST00000559711 SPSB1Q96BD6 273 aa11□□□□□ -0.65
USP3-213ENST00000559711 NEURL2Q9BR09 285 aa11□□□□□ -0.65
USP3-213ENST00000559711 REPIN1Q9BWE0 567 aaKnown RBP11□□□□□ -0.65
USP3-213ENST00000559711 LUZP4Q9P127 313 aa11□□□□□ -0.65
USP3-213ENST00000559711 MRPS28Q9Y2Q9 187 aaKnown RBP11□□□□□ -0.65
USP3-213ENST00000559711 CACNG2Q9Y698 323 aa11□□□□□ -0.65
USP3-213ENST00000559711 CACNA1GO43497 2377 aa11□□□□□ -0.65
USP3-213ENST00000559711 FAM240BA0A1B0GVZ2 78 aa10.99□□□□□ -0.65
USP3-213ENST00000559711 METTL21EPA6NDL7 271 aa10.99□□□□□ -0.65
USP3-213ENST00000559711 GMDSO60547 372 aa10.99□□□□□ -0.65
USP3-213ENST00000559711 ECDO95905 644 aaPredicted RBP10.99□□□□□ -0.65
USP3-213ENST00000559711 HOXD4P09016 255 aaPredicted RBP10.99□□□□□ -0.65
USP3-213ENST00000559711 NAT2P11245 290 aa10.99□□□□□ -0.65
USP3-213ENST00000559711 PTHLHP12272 177 aa10.99□□□□□ -0.65
USP3-213ENST00000559711 PTGFRP43088 359 aa10.99□□□□□ -0.65
USP3-213ENST00000559711 PMPCAQ10713 525 aa10.99□□□□□ -0.65
USP3-213ENST00000559711 RNASE12Q5GAN4 147 aaKnown RBP10.99□□□□□ -0.65
USP3-213ENST00000559711 CLVS2Q5SYC1 327 aa10.99□□□□□ -0.65
USP3-213ENST00000559711 RAB12Q6IQ22 244 aa10.99□□□□□ -0.65
USP3-213ENST00000559711 GLIPR1L1Q6UWM5 242 aa10.99□□□□□ -0.65
USP3-213ENST00000559711 MDP1Q86V88 176 aa10.99□□□□□ -0.65
USP3-213ENST00000559711 Q8NA96 180 aa10.99□□□□□ -0.65
USP3-213ENST00000559711 C1orf162Q8NEQ5 155 aaPredicted RBP10.99□□□□□ -0.65
USP3-213ENST00000559711 STARD4Q96DR4 205 aa10.99□□□□□ -0.65
USP3-213ENST00000559711 MMP28Q9H239 520 aa10.99□□□□□ -0.65
USP3-213ENST00000559711 GHRLQ9UBU3 117 aa10.99□□□□□ -0.65
USP3-213ENST00000559711 FAM215AQ9Y5M1 114 aa10.99□□□□□ -0.65
USP3-213ENST00000559711 MEIOCA2RUB1 952 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 FIGNL2A6NMB9 653 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 CENPXA8MT69 81 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 H7C417 338 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 SCGNO76038 276 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 TOXO94900 526 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 GSTT2BP0CG30 244 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 CCL2P13500 99 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 CCNOP22674 350 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 PRKACBP22694 351 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 BTCP35070 178 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 APLNRP35414 380 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 OR3A4PP47883 348 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 AP3S2P59780 193 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 EIF2S3LQ2VIR3 472 aaKnown RBP10.98□□□□□ -0.65
USP3-213ENST00000559711 C11orf91Q3C1V1 193 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 PLA1AQ53H76 456 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 PLET1Q6UQ28 207 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 GABRG1Q8N1C3 465 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 PNLDC1Q8NA58 520 aaKnown RBP10.98□□□□□ -0.65
USP3-213ENST00000559711 KCNG3Q8TAE7 436 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 FAM57AQ8TBR7 257 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 CHAC2Q8WUX2 184 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 GPER1Q99527 375 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 NUDT16L1Q9BRJ7 211 aaKnown RBP10.98□□□□□ -0.65
USP3-213ENST00000559711 NEK6Q9HC98 313 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 GPR173Q9NS66 373 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 MYEF2Q9P2K5 600 aaKnown RBP10.98□□□□□ -0.65
USP3-213ENST00000559711 NLKQ9UBE8 527 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 KLK11Q9UBX7 282 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 MTFP1Q9UDX5 166 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 RAXQ9Y2V3 346 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 BOD1L1Q8NFC6 3051 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 ZNF816-ZNF321PA0A0X1KG74 233 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 ANKRD20A5PA0PJZ0 165 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 RAB27BO00194 218 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 SULT1C2O00338 296 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 LYZL6O75951 148 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 NRASP01111 189 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 TPOP07202 933 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 ZNF14P17017 642 aaPredicted RBP10.98□□□□□ -0.65
USP3-213ENST00000559711 PRSS3P35030 304 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 TIMP3P35625 211 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 TDGF1P3P51864 188 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 PER3P56645 1201 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 SNTB2Q13425 540 aaKnown RBP10.98□□□□□ -0.65
USP3-213ENST00000559711 GK2Q14410 553 aaPredicted RBP10.98□□□□□ -0.65
USP3-213ENST00000559711 CNN3Q15417 329 aaKnown RBP10.98□□□□□ -0.65
USP3-213ENST00000559711 C1orf185Q5T7R7 199 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 ZNF101Q8IZC7 436 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 UBASH3BQ8TF42 649 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 DEDD2Q8WXF8 326 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 FAM46BQ96A09 425 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 MS4A3Q96HJ5 214 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 MARVELD1Q9BSK0 173 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 OPA3Q9H6K4 179 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 PROCRQ9UNN8 238 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 STARD10Q9Y365 291 aa10.98□□□□□ -0.65
USP3-213ENST00000559711 SPTBN4Q9H254 2564 aa10.97□□□□□ -0.65
USP3-213ENST00000559711 MED12LQ86YW9 2145 aa10.97□□□□□ -0.65
USP3-213ENST00000559711 RAD51DO75771 328 aa10.97□□□□□ -0.65
USP3-213ENST00000559711 RBBP9O75884 186 aa10.97□□□□□ -0.65
USP3-213ENST00000559711 NGFP01138 241 aa10.97□□□□□ -0.65
USP3-213ENST00000559711 CHRM2P08172 466 aa10.97□□□□□ -0.65
USP3-213ENST00000559711 UBE2NP61088 152 aaKnown RBP10.97□□□□□ -0.65
USP3-213ENST00000559711 SSBP1Q04837 148 aaKnown RBP10.97□□□□□ -0.65
USP3-213ENST00000559711 MALLQ13021 153 aa10.97□□□□□ -0.65
USP3-213ENST00000559711 FAM189A2Q15884 450 aa10.97□□□□□ -0.65
USP3-213ENST00000559711 MOGAT2Q3SYC2 334 aa10.97□□□□□ -0.65
USP3-213ENST00000559711 DMRTC1Q5HYR2 192 aa10.97□□□□□ -0.65
USP3-213ENST00000559711 ZNF554Q86TJ5 538 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 139 ms