RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CDS1Q92903 461 aa1□□□□□ -2.25
USP3-209ENST00000558925 TCEAL3Q969E4 200 aa1□□□□□ -2.25
USP3-209ENST00000558925 CPNE4Q96A23 557 aaPredicted RBP1□□□□□ -2.25
USP3-209ENST00000558925 TMEM159Q96B96 161 aa1□□□□□ -2.25
USP3-209ENST00000558925 RCN3Q96D15 328 aa1□□□□□ -2.25
USP3-209ENST00000558925 CENPNQ96H22 339 aaPredicted RBP1□□□□□ -2.25
USP3-209ENST00000558925 CPB2Q96IY4 423 aa1□□□□□ -2.25
USP3-209ENST00000558925 BTN2A3PQ96KV6 586 aa1□□□□□ -2.25
USP3-209ENST00000558925 OR4K3Q96R72 315 aa1□□□□□ -2.25
USP3-209ENST00000558925 CAMK2N2Q96S95 79 aa1□□□□□ -2.25
USP3-209ENST00000558925 ZNF382Q96SR6 550 aa1□□□□□ -2.25
USP3-209ENST00000558925 GPR21Q99679 349 aa1□□□□□ -2.25
USP3-209ENST00000558925 C20orf144Q9BQM9 153 aa1□□□□□ -2.25
USP3-209ENST00000558925 NDFIP1Q9BT67 221 aa1□□□□□ -2.25
USP3-209ENST00000558925 ARV1Q9H2C2 271 aa1□□□□□ -2.25
USP3-209ENST00000558925 OR51B5Q9H339 312 aa1□□□□□ -2.25
USP3-209ENST00000558925 ARMC7Q9H6L4 198 aa1□□□□□ -2.25
USP3-209ENST00000558925 C8orf17Q9NRJ1 99 aa1□□□□□ -2.25
USP3-209ENST00000558925 DDIT4Q9NX09 232 aa1□□□□□ -2.25
USP3-209ENST00000558925 ZNRD1Q9P1U0 126 aa1□□□□□ -2.25
USP3-209ENST00000558925 ZNF282Q9UDV7 671 aaPredicted RBP1□□□□□ -2.25
USP3-209ENST00000558925 VAX2Q9UIW0 290 aa1□□□□□ -2.25
USP3-209ENST00000558925 KLK12Q9UKR0 248 aa1□□□□□ -2.25
USP3-209ENST00000558925 FARSAQ9Y285 508 aaKnown RBP1□□□□□ -2.25
USP3-209ENST00000558925 SIGLEC7Q9Y286 467 aa1□□□□□ -2.25
USP3-209ENST00000558925 STK38LQ9Y2H1 464 aa1□□□□□ -2.25
USP3-209ENST00000558925 SIGLEC9Q9Y336 463 aa1□□□□□ -2.25
USP3-209ENST00000558925 PPIL1Q9Y3C6 166 aa1□□□□□ -2.25
USP3-209ENST00000558925 YTHDF2Q9Y5A9 579 aaKnown RBP1□□□□□ -2.25
USP3-209ENST00000558925 V9GYY9 64 aa1□□□□□ -2.25
USP3-209ENST00000558925 IGHV3-72A0A0B4J1Y9 119 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 CCL15-CCL14A0A0B4J2E2 113 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 IGKV6-21A0A0C4DH24 114 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 LOC100506127A0A0U1RQW1 187 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 LINC00854A0A1B0GVQ3 168 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 OR5H1A6NKK0 313 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 K7EM74 188 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 M0R1X1 148 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 PSMD11O00231 422 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 BPY2O14599 106 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 RBFOX2O43251 390 aaKnown RBP eCLIP0.99□□□□□ -2.25
USP3-209ENST00000558925 B4GALT5O43286 388 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 CHMP2AO43633 222 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 SPOPO43791 374 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 RAD1O60671 282 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 TRAPPC6AO75865 159 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 YIF1AO95070 293 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 VAPBO95292 243 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 TTC4O95801 387 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 PAHP00439 452 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 IGLV2-8P01709 118 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 TRBV12-3P01733 135 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 HLA-DQB1P01920 261 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 RHOXF2BP0C7M4 288 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 CCDC172P0C7W6 258 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 LINC00869P0C866 280 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 CCL2P13500 99 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 GFAPP14136 432 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 MYL9P24844 172 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 PAX6P26367 422 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 DEKP35659 375 aaKnown RBP0.99□□□□□ -2.25
USP3-209ENST00000558925 ARL2P36404 184 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 CMC4P56277 68 aaPredicted RBP0.99□□□□□ -2.25
USP3-209ENST00000558925 RPL18AQ02543 176 aaKnown RBP0.99□□□□□ -2.25
USP3-209ENST00000558925 INCA1Q0VD86 236 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 PNOCQ13519 176 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 GPR176Q14439 515 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 STK38Q15208 465 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 TNXAQ16473 311 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 CCL15Q16663 113 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 C18orf21Q32NC0 220 aaPredicted RBP0.99□□□□□ -2.25
USP3-209ENST00000558925 Q3ZCU0 254 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 FBXO48Q5FWF7 155 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 LIN9Q5TKA1 542 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 STEAP4Q687X5 459 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 ZFP1Q6P2D0 407 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 PID1Q7Z2X4 250 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 DAW1Q8N136 415 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 SYS1Q8N2H4 156 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 ATPAF2Q8N5M1 289 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 DRAM1Q8N682 238 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 GATSQ8NAP1 163 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 C19orf18Q8NEA5 215 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 OR1J4Q8NGS1 313 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 LINC01560Q8TB33 94 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 ING5Q8WYH8 240 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 RERGQ96A58 199 aaPredicted RBP0.99□□□□□ -2.25
USP3-209ENST00000558925 EXOSC8Q96B26 276 aaKnown RBP0.99□□□□□ -2.25
USP3-209ENST00000558925 S100PBPQ96BU1 408 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 NARS2Q96I59 477 aaKnown RBP0.99□□□□□ -2.25
USP3-209ENST00000558925 ADTRPQ96IZ2 230 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 CFAP53Q96M91 514 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 ZNF75AQ96N20 296 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 RDH12Q96NR8 316 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 SDHCQ99643 169 aaPredicted RBP0.99□□□□□ -2.25
USP3-209ENST00000558925 KCNS3Q9BQ31 491 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 TMEM175Q9BSA9 504 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 NUDT9Q9BW91 350 aa0.99□□□□□ -2.25
USP3-209ENST00000558925 FRMD8P1Q9BZ68 369 aaPredicted RBP0.99□□□□□ -2.25
USP3-209ENST00000558925 RAB1BQ9H0U4 201 aa0.99□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms