RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 ARPC4P59998 168 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 RAC1P63000 192 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 HIST1H3AP68431 136 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 OR2F1Q13607 317 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 PPA1Q15181 289 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 INPP5JQ15735 1006 aaPredicted RBP6.41□□□□□ -1.38
VPS13C-206ENST00000558338 SGCAQ16586 387 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 AANATQ16613 207 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 VAX1Q5SQQ9 334 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 HIST2H3PS2Q5TEC6 136 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 Q6ZSR3 168 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 HIST2H3AQ71DI3 136 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 RPS19BP1Q86WX3 136 aaKnown RBP6.41□□□□□ -1.38
VPS13C-206ENST00000558338 TMEM17Q86X19 198 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 OR5AS1Q8N127 324 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 ARRDC1Q8N5I2 433 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 CLRN3Q8NCR9 226 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 OR9K2Q8NGE7 335 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 OR6K3Q8NGY3 331 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 OR14K1Q8NGZ2 314 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 PPP1R35Q8TAP8 253 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 LRRC20Q8TCA0 184 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 MITD1Q8WV92 249 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 RAB3CQ96E17 227 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 ZC3H10Q96K80 434 aaKnown RBP6.41□□□□□ -1.38
VPS13C-206ENST00000558338 NKX3-1Q99801 234 aaPredicted RBP6.41□□□□□ -1.38
VPS13C-206ENST00000558338 PDCD10Q9BUL8 212 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 ZNF416Q9BWM5 594 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 MFFQ9GZY8 342 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 LPAR5Q9H1C0 372 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 CDCP1Q9H5V8 836 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 ZMAT3Q9HA38 289 aaKnown RBP6.41□□□□□ -1.38
VPS13C-206ENST00000558338 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.41□□□□□ -1.38
VPS13C-206ENST00000558338 MYEF2Q9P2K5 600 aaKnown RBP6.41□□□□□ -1.38
VPS13C-206ENST00000558338 VSIG4Q9Y279 399 aa6.41□□□□□ -1.38
VPS13C-206ENST00000558338 DHRS7CA6NNS2 312 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 RER1O15258 196 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 DHHO43323 396 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 CA11O75493 328 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 SIX6O95475 246 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 MPIG6BO95866 241 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 CFDP00746 253 aaPredicted RBP6.4□□□□□ -1.39
VPS13C-206ENST00000558338 OPN1LWP04000 364 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 P04436 131 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 CSN2P05814 226 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 CCL3P10147 92 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 ABOP16442 354 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 MGMTP16455 207 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 GNB3P16520 340 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 ZBTB25P24278 435 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 HRH1P35367 487 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 TAS2R46P59540 309 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 SORDQ00796 357 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 CHAF1BQ13112 559 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 BAMBIQ13145 260 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 MFAP5Q13361 173 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 C2orf68Q2NKX9 166 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 ZNF528Q3MIS6 628 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 DCAF12L2Q5VW00 463 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 TMEM123Q8N131 208 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 OR52H1Q8NGJ2 320 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 OR4K15Q8NH41 348 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 LILRB1Q8NHL6 650 aaPredicted RBP6.4□□□□□ -1.39
VPS13C-206ENST00000558338 SUN5Q8TC36 379 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 SSC4DQ8WTU2 575 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 NUDCD2Q8WVJ2 157 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 CDX2Q99626 313 aaPredicted RBP6.4□□□□□ -1.39
VPS13C-206ENST00000558338 ZPBPQ9BS86 351 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 ULBP2Q9BZM5 246 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 SELENOIQ9C0D9 397 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 CHST6Q9GZX3 395 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 OR10A2Q9H208 303 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 FSCN3Q9NQT6 498 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 SLC39A1Q9NY26 324 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 RDH8Q9NYR8 311 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 PCDHGA1Q9Y5H4 931 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 V9GYS6 101 aa6.4□□□□□ -1.39
VPS13C-206ENST00000558338 PI4KAP42356 2102 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 PHF3Q92576 2039 aaKnown RBP6.39□□□□□ -1.39
VPS13C-206ENST00000558338 KANTRA0A1W2PQU2 76 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 C9orf170A2RU37 121 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 A6NLC8 198 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 RAMP1O60894 148 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 LILRA1O75019 489 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 KLF7O75840 302 aaPredicted RBP6.39□□□□□ -1.39
VPS13C-206ENST00000558338 DUS4LO95620 317 aaKnown RBP6.39□□□□□ -1.39
VPS13C-206ENST00000558338 CELA2AP08217 269 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 SLC2A1P11166 492 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 OTX1P32242 354 aaPredicted RBP6.39□□□□□ -1.39
VPS13C-206ENST00000558338 CD96P40200 585 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 ECI1P42126 302 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 OR3A4PP47883 348 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 SLC6A9P48067 706 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 IL13RA1P78552 427 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 MRPS34P82930 218 aaKnown RBP6.39□□□□□ -1.39
VPS13C-206ENST00000558338 CYCSP99999 105 aaKnown RBP6.39□□□□□ -1.39
VPS13C-206ENST00000558338 ENDOGQ14249 297 aaKnown RBP6.39□□□□□ -1.39
VPS13C-206ENST00000558338 NKPD1Q17RQ9 610 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 LY6G6FQ5SQ64 297 aa6.39□□□□□ -1.39
VPS13C-206ENST00000558338 SLC23A3Q6PIS1 610 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms