RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 MRPL21Q7Z2W9 205 aaKnown RBP7.41□□□□□ -1.22
USP3-208ENST00000558285 C1orf87Q8N0U7 546 aa7.41□□□□□ -1.22
USP3-208ENST00000558285 PAQR4Q8N4S7 273 aaPredicted RBP7.41□□□□□ -1.22
USP3-208ENST00000558285 LINC01356Q8N9X3 169 aa7.41□□□□□ -1.22
USP3-208ENST00000558285 SLC37A3Q8NCC5 494 aa7.41□□□□□ -1.22
USP3-208ENST00000558285 SGCDQ92629 289 aa7.41□□□□□ -1.22
USP3-208ENST00000558285 GPA33Q99795 319 aa7.41□□□□□ -1.22
USP3-208ENST00000558285 BEX2Q9BXY8 128 aa7.41□□□□□ -1.22
USP3-208ENST00000558285 BPESC1Q9GZL8 116 aa7.41□□□□□ -1.22
USP3-208ENST00000558285 CYB5R1Q9UHQ9 305 aa7.41□□□□□ -1.22
USP3-208ENST00000558285 HIVEP2P31629 2446 aa7.4□□□□□ -1.22
USP3-208ENST00000558285 HIVEP1P15822 2718 aa7.4□□□□□ -1.22
USP3-208ENST00000558285 PRR14LQ5THK1 2151 aa7.4□□□□□ -1.22
USP3-208ENST00000558285 A0A075B6Q4 140 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 LOC100289279A0A1B0GTE1 492 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 LINC00854A0A1B0GVQ3 168 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 OR6C68A6NDL8 312 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 VWC2LB2RUY7 222 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 B4DSR2 109 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 ZNF878C9JN71 531 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 F5H5K5 113 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 G3V2T6 193 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 RER1O15258 196 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 SPRY3O43610 288 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 SOX14O95416 240 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 LCATP04180 440 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 CD55P08174 381 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 TACSTD2P09758 323 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 SOX6P35712 828 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 GGT2P36268 569 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 WNT5AP41221 380 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 FXYD6P3P58550 94 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 ISL1P61371 349 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 VBP1P61758 197 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 RPS7P62081 194 aaKnown RBP7.4□□□□□ -1.23
USP3-208ENST00000558285 HIST1H3AP68431 136 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 CCL8P80075 99 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 GALEQ14376 348 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 MAD2L1BPQ15013 274 aaPredicted RBP7.4□□□□□ -1.23
USP3-208ENST00000558285 TSTQ16762 297 aaKnown RBP7.4□□□□□ -1.23
USP3-208ENST00000558285 TEX30Q5JUR7 227 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 SLC35D3Q5M8T2 416 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 SPATA46Q5T0L3 261 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 HIST2H3PS2Q5TEC6 136 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 TMEM236Q5W0B7 351 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 SLC18B1Q6NT16 456 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 FBXW12Q6X9E4 464 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 HIST2H3AQ71DI3 136 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 GLCCI1Q86VQ1 547 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 LSRQ86X29 649 aaPredicted RBP7.4□□□□□ -1.23
USP3-208ENST00000558285 ZNF101Q8IZC7 436 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 SPICQ8N5J4 248 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 OR5K1Q8NHB7 308 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 SPRYD4Q8WW59 207 aaPredicted RBP7.4□□□□□ -1.23
USP3-208ENST00000558285 HAVCR1Q96D42 359 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 CMBLQ96DG6 245 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 INTS14Q96SY0 518 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 KRT84Q9NSB2 600 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 IL19Q9UHD0 177 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 PURGQ9UJV8 347 aaKnown RBP7.4□□□□□ -1.23
USP3-208ENST00000558285 TMEM14AQ9Y6G1 99 aa7.4□□□□□ -1.23
USP3-208ENST00000558285 C2CD3Q4AC94 2353 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 FLNAP21333 2647 aaKnown RBP7.39□□□□□ -1.23
USP3-208ENST00000558285 M0R135 149 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 XRCC2O43543 280 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 LMX1BO60663 402 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 CRLF1O75462 422 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 SPI1P17947 270 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 SLC35A2P78381 396 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 CRMP1Q14194 572 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 GINS1Q14691 196 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 KCTD18Q6PI47 426 aaPredicted RBP7.39□□□□□ -1.23
USP3-208ENST00000558285 Q71RC1 249 aaPredicted RBP7.39□□□□□ -1.23
USP3-208ENST00000558285 PGAP1Q75T13 922 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 CCDC190Q86UF4 302 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 LRP11Q86VZ4 500 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 KLBQ86Z14 1044 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 MUC20Q8N307 709 aaPredicted RBP7.39□□□□□ -1.23
USP3-208ENST00000558285 CYB561A3Q8NBI2 242 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 OR52H1Q8NGJ2 320 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 OR11L1Q8NGX0 322 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 OR51F2Q8NH61 342 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 ST7LQ8TDW4 575 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 DEDD2Q8WXF8 326 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 ERGIC1Q969X5 290 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 ZNF799Q96GE5 643 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 RHOVQ96L33 236 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 TSSK2Q96PF2 358 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 SMR3AQ99954 134 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 FN3KQ9H479 309 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 RGCCQ9H4X1 137 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 ABCB9Q9NP78 766 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 CENPMQ9NSP4 180 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 TMEM100Q9NV29 134 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 ING3Q9NXR8 418 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 ZNF391Q9UJN7 358 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 PCDHB10Q9UN67 800 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 DIMT1Q9UNQ2 313 aaKnown RBP7.39□□□□□ -1.23
USP3-208ENST00000558285 LHFPL6Q9Y693 200 aa7.39□□□□□ -1.23
USP3-208ENST00000558285 ALPK2Q86TB3 2170 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms