RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 ZNF345Q14585 488 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 PAN3Q58A45 887 aaKnown RBP11.34□□□□□ -0.59
LDLR-207ENST00000558013 LPCAT3Q6P1A2 487 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 RABEPKQ7Z6M1 372 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 CARFQ8N187 725 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 EIF4E3Q8N5X7 224 aaKnown RBP11.34□□□□□ -0.59
LDLR-207ENST00000558013 PAQR8Q8TEZ7 354 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 TMED6Q8WW62 240 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 DNASE2BQ8WZ79 361 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 OR10C1Q96KK4 312 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 ASPMQ8IZT6 3477 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 LY6G6EA0A0G2JKS1 128 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 GPR31O00270 319 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 HLA-GP17693 338 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 SERPINA2P20848 420 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 TMEM88Q6PEY1 159 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 GALNTL5Q7Z4T8 443 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 KMT5CQ86Y97 462 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 NAXEQ8NCW5 288 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 OR4K17Q8NGC6 315 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 OR13G1Q8NGZ3 307 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 PIGTQ969N2 578 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 JSRP1Q96MG2 331 aaPredicted RBP11.34□□□□□ -0.59
LDLR-207ENST00000558013 RTBDNQ9BSG5 229 aaPredicted RBP11.34□□□□□ -0.59
LDLR-207ENST00000558013 HDHD3Q9BSH5 251 aaPredicted RBP11.34□□□□□ -0.59
LDLR-207ENST00000558013 DEFB126Q9BYW3 111 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 TMEM231Q9H6L2 316 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 ELL3Q9HB65 397 aaPredicted RBP11.34□□□□□ -0.59
LDLR-207ENST00000558013 U3KQA8 63 aa11.34□□□□□ -0.59
LDLR-207ENST00000558013 ZNF726A6NNF4 738 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 STMND1H3BQB6 276 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 ETV2O00321 342 aaPredicted RBP11.33□□□□□ -0.6
LDLR-207ENST00000558013 SIGLEC6O43699 453 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 KISS1Q15726 138 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 UBE2V2Q15819 145 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 RSPO1Q2MKA7 263 aaPredicted RBP11.33□□□□□ -0.6
LDLR-207ENST00000558013 ZNF385CQ66K41 422 aaPredicted RBP11.33□□□□□ -0.6
LDLR-207ENST00000558013 PNLDC1Q8NA58 520 aaKnown RBP11.33□□□□□ -0.6
LDLR-207ENST00000558013 DTWD2Q8NBA8 298 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 OR51T1Q8NGJ9 327 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 RNF138Q8WVD3 245 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 SPACA9Q96E40 222 aaPredicted RBP11.33□□□□□ -0.6
LDLR-207ENST00000558013 FANCFQ9NPI8 374 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 RARRES3Q9UL19 164 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 GPR132Q9UNW8 380 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 BET1O15155 118 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 PNLIPP16233 465 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 DRAM2Q6UX65 266 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 PGAP1Q75T13 922 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 OR5L2Q8NGL0 311 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 OR6X1Q8NH79 312 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 KCNG3Q8TAE7 436 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 ASB13Q8WXK3 278 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 CCDC74BQ96LY2 380 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 CHRDQ9H2X0 955 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 ZC4H2Q9NQZ6 224 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 GSKIPQ9P0R6 139 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 CHCHD2Q9Y6H1 151 aaPredicted RBP11.33□□□□□ -0.6
LDLR-207ENST00000558013 ADAMTS9Q9P2N4 1935 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 ARPC4-TTLL3A0A0A6YYG9 625 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 TOR1AO14656 332 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 ACTL6AO96019 429 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 KNG1P01042 644 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 MPZP25189 248 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 TMEM128Q5BJH2 165 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 SLC25A53Q5H9E4 307 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 AADACL3Q5VUY0 350 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 CDCP2Q5VXM1 449 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 TDHQ8IZJ6 230 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 OR14K1Q8NGZ2 314 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 PIK3IP1Q96FE7 263 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 OXGR1Q96P68 337 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 UBE2ZQ9H832 354 aaPredicted RBP11.33□□□□□ -0.6
LDLR-207ENST00000558013 ACKR4Q9NPB9 350 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 OR2S2Q9NQN1 319 aa11.33□□□□□ -0.6
LDLR-207ENST00000558013 MFNGO00587 321 aa11.32□□□□□ -0.6
LDLR-207ENST00000558013 HOXB5P09067 269 aa11.32□□□□□ -0.6
LDLR-207ENST00000558013 ADCYAP1P18509 176 aa11.32□□□□□ -0.6
LDLR-207ENST00000558013 AMY2BP19961 511 aa11.32□□□□□ -0.6
LDLR-207ENST00000558013 BLVRBP30043 206 aaPredicted RBP11.32□□□□□ -0.6
LDLR-207ENST00000558013 SNU13P55769 128 aaKnown RBP11.32□□□□□ -0.6
LDLR-207ENST00000558013 GUCA2BQ16661 112 aa11.32□□□□□ -0.6
LDLR-207ENST00000558013 PGAM5Q96HS1 289 aa11.32□□□□□ -0.6
LDLR-207ENST00000558013 ARPC5LQ9BPX5 153 aa11.32□□□□□ -0.6
LDLR-207ENST00000558013 ACY1Q03154 408 aa11.32□□□□□ -0.6
LDLR-207ENST00000558013 HIST3H3Q16695 136 aa11.32□□□□□ -0.6
LDLR-207ENST00000558013 PLEKHN1Q494U1 663 aaPredicted RBP11.32□□□□□ -0.6
LDLR-207ENST00000558013 C6orf201Q7Z4U5 140 aa11.32□□□□□ -0.6
LDLR-207ENST00000558013 RBM24Q9BX46 236 aaKnown RBP11.32□□□□□ -0.6
LDLR-207ENST00000558013 CYTL1Q9NRR1 136 aa11.32□□□□□ -0.6
LDLR-207ENST00000558013 B3GALT1Q9Y5Z6 326 aa11.32□□□□□ -0.6
LDLR-207ENST00000558013 ZDBF2Q9HCK1 2354 aa11.32□□□□□ -0.6
LDLR-207ENST00000558013 ZNHIT1O43257 154 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 CHRM2P08172 466 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 CCL3P10147 92 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 PTGFRP43088 359 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 CSNK2A1P68400 391 aaPredicted RBP11.31□□□□□ -0.6
LDLR-207ENST00000558013 BRICD5Q6PL45 260 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 CSNK2A3Q8NEV1 391 aa11.31□□□□□ -0.6
LDLR-207ENST00000558013 OR5H2Q8NGV7 314 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms